BAC Information

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BAC

Clone NameMSMg01-321O18
Chromosome12 (Build37)
Map Location 72,679,610 - 72,850,018
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041061, Frmd6, Actr10, Psma3, 3110056K07Rik, Arid4a, Timm9, LOC100041035, 2700049A03Rik, LOC666162, Dact1, LOC100041190
Downstream geneDaam1, LOC666213, LOC666220, Gpr135, LOC100041239, 2810055F11Rik, 1200003C05Rik, 4930403N07Rik, Rtn1, Lrrc9, 1810048J11Rik, LOC209183, LOC100041323, Dhrs7, LOC100041157
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321O18.T7 (MSMg01no321_o18.b1)MSMg01-321O18.TJ (MSMg01no321_o18.g1)
ACCAG440762AG440763
length751779
length of high quality
(start - end)		214 (432 - 645)382 (70 - 451)
definitionCHROMAT_FILE: MSMg01no321_o18.b1 PHD_FILE: MSMg01no321_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:46 2005CHROMAT_FILE: MSMg01no321_o18.g1 PHD_FILE: MSMg01no321_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,679,610 - 72,679,823)(72,849,680 - 72,850,018)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCGCGGAATTCA
GTAAGATGTCCGAAAACGGGGCAGCTCTGTCCCCGGTGGGACTGTCTGAT
GAAGTGGGCTCTGTTACACCGCTCTGGGGGCTTCATAGGCTTTGATTACT
GCTCACGAGGTTTGCATTTCTTCAAGGAGCTTAATGAGGTTTTTCTAGGG
GGCAAAAATCATAAATTTCCATGTTTTAGTAGCTCGCTTGGTAGAAGCAT
AAATTGTACATCTCTCTCACAGCCCATAGGAGAGGGTGCCTCACTTGCTT
CTTCTGTGAGGTAGTATTTATATGTCATCTGGTCCATCACGTCTGAAGAA
ATATATTTTTTTTTATGCCCCCCCCCCCCATTAATTATCTTTTAAAGGTA
CCTACTCAGCCCCCACCAAAATAACAAAATTGCAAAATGTGTAATGTGTC
TTTTGCAGCAGTAGGAGCCAATGCCCAATGTCAACTGAATGTTTTTATAG
CCTTAAAATATCTGCATTCATTTTCTTTTATATGGTCATAATTATAGAGC
AAAACAAATCATTTCTAGTAAATTCCAACTTATTTAAGTGATCTTCTTCT
CCCACCAATCTTCTTTGATTAATTTATTTATTTCCTATTCTTTTGCCTAA
AAGTACTTCTATATCTTAAATGATTCTAACCAAATTCATAGTTGATAGCC
AAAAGTTTTTAATAACTCTCCCCCATAGTTTAATGGCATACACATCAACG
T

ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTAGAAGGGATTATTTGGTTTAGCTCCTTT
CTAGGTATGAAGATGCCCCTCTCCCACCATCTGGTTAGAGTAATCTGTTG
CAGCCTGAGTTAGTCACACCTCTCCCTCCAGTTCTTGGCAGGCTGTCAAC
CGCAAATAGGAACACGAAACCAAAATAACAGCTTTACTACTGATGGAGCA
GGGCTTGAGGCTGCAGGCTTGGAGCAGAGCTGGAAAACACCGGCGGTGCC
TGAGCCCTTGTGCTCATAGCTGCGTTGACCAGTCTCATCTTAGCAAAGTA
GGTGGGTGTGAGCACTGGCCTTTTCCTACAGGACAAGCCTTTACCCAGAA
GGCTGACACCCCCACACAGGAGATGAGAGAGGGAGAGGGAGAGGGAGAGG
TCTCTTTTTCTCTTCCTCCCTTTCCTTTTTTTTTTCTCTCCCCCCCCTTT
TTTTTCCCTTTCCTCGTTCCCCCCCCTTTTTTTCCTTTTTTTTTCTTTTT
CTCCCCTTTTCTGCTTCCGCGCTTTTTTTTTCGCCCTTGTTCCTTTTTCT
CTCTTTCCCACTTTTTTCGCTCCTTTTTTTTCCCTCTTCTTTTTCCCCCC
CCTTCTTCCCCCTTTTCTTTTTTTTTTCCCCTTTCCTTTTTCTTTTCCCC
TCTCTCCTCCCTATATCTCCCCTTTATTTTTTTTTACTTCTCCCCTTTCT
GTTTCCTTCGATATTTTGTTCTCCACCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_o18.b1 MSMg01no321_o18.b1 CHROMAT_FILE:
MSMg01no321_o18.b1 PHD_FILE: MSMg01no321_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:46 2005
         (214 letters)



>mm_chr12_72679410_72680023
          Length = 614

 Score =  406 bits (210), Expect = e-118
 Identities = 213/214 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcaaaatgtgtaatgtgtcttttgcagcagtaggagccaatgcccaatgtcaactgaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcaaaatgtgtaatgtgtcttttgcagcagtaggagccaatgcccaatgtcaactgaatg 260

                                                                       
Query: 61  tttttatagccttaaaatatctgcattcattttcttttatatggtcataattatagagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttttatagccttaaaatatctgcattcattttcttttatatggtcataattatagagca 320

                                                                       
Query: 121 aaacaaatcatttctagtaaattccaacttatttaagtgatcttcttctcccaccaatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacaaatcatttctagtaaattccaacttatttaagtgatcttcttctcccaccaatct 380

                                             
Query: 181 tctttgattaatttatttatttcctattcttttg 214
           ||||||||| ||||||||||||||||||||||||
Sbjct: 381 tctttgattgatttatttatttcctattcttttg 414


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 614
Length adjustment: 9
Effective length of query: 205
Effective length of database: 605
Effective search space:   124025
Effective search space used:   124025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no321_o18.g1 MSMg01no321_o18.g1 CHROMAT_FILE:
MSMg01no321_o18.g1 PHD_FILE: MSMg01no321_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:46 2005
         (382 letters)



>mm_chr12_72849480_72850261
          Length = 782

 Score =  617 bits (319), Expect = 0.0
 Identities = 334/339 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttagaagggattatttggtttagctcctttctaggtatgaagatgcccctctcccacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 cttagaagggattatttggtttagctcctttctaggtatgaagatgcccctctcccacca 480

                                                                       
Query: 61  tctggttagagtaatctgttgcagcctgagttagtcacacctctccctccagttcttggc 120
           |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 479 tctggttatagtaatctgttgcagcctgagttagtcacacttctccctccagttcttggc 420

                                                                       
Query: 121 aggctgtcaaccgcaaataggaacacgaaaccaaaataacagctttactactgatggagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 aggctgtcaaccgcaaataggaacacgaaaccaaaataacagctttactactgatggagc 360

                                                                       
Query: 181 agggcttgaggctgcaggcttggagcagagctggaaaacaccggcggtgcctgagccctt 240
           ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 359 agggcttgaggctgcaggcttggagcagagctggaaagcaccagcggtgcctgagccctt 300

                                                                       
Query: 241 gtgctcatagctgcgttgaccagtctcatcttagcaaagtaggtgggtgtgagcactggc 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gtgctcagagctgcgttgaccagtctcatcttagcaaagtaggtgggtgtgagcactggc 240

                                                  
Query: 301 cttttcctacaggacaagcctttacccagaaggctgaca 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 cttttcctacaggacaagcctttacccagaaggctgaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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