BAC Information

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BAC

Clone NameMSMg01-322J08
Chromosome12 (Build37)
Map Location 26,364,560 - 26,364,846
singlet/doubletsinglet
Overlap genenone
Upstream geneCys1, Rrm2, LOC668719, Mboat2, EG629397, C330002I19Rik, Id2, LOC100042973, LOC100042974
Downstream geneLOC668726, Rnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322J08.T7 (MSMg01no322_j08.b1)MSMg01-322J08.TJ (MSMg01no322_j08.g1)
ACCAG441242AG441243
length775748
length of high quality
(start - end)
287 (74 - 360)290 (76 - 365)
definitionCHROMAT_FILE: MSMg01no322_j08.b1 PHD_FILE: MSMg01no322_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:35 2005CHROMAT_FILE: MSMg01no322_j08.g1 PHD_FILE: MSMg01no322_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:05:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTTCCTTTGCTCTTCAAGATTATATGACCCCTCTTGACGATTTTT
CCAAGATTATTAACATTTACCCTCCAAGAATATCATCCACAGCTTCCTCA
AGATGTGCATCTCTGTACCAGTTTGCCGTCGTTACTGAGATTTCATCTGA
CAGTATCTATCCTCAGTAGCTTTGCTTTTAAAGAGCCTTTTTGCCTTTCA
TTTTTCTGTTTTGTTGTGTGTCCACATGTATGGACATGTGTGTGACCCCA
CATTTGTGGTGTGTGTGTGTGTGTGTGTGTATGAAAGAGAGAGAGAGAAA
GAGAGAGAGATATTTTTTAGAGACACCCCCCCCCTGTGGGTGAGAAAGGA
GGCCAGAGTAAGTTACCCCCCTTGCTCTATATACACACTGTTCTATTCTC
TTGAGGCAGGGTCTCTCCCTGAGCCTGGAGTTAGACTGGTATTCAGGAGC
CAGCAAGCCCTTAATGATCCTACTGTCTTCACAGCACTGTTTTTTACAGG
AGCGCATTTTTCATTCCTTGGCTTTTCTACATATGTGCTTATGCTTTTAT
TATTTCCTCCGGCTCCGTATGCTTTACTAGCTCAGGGATCTTTATCTCCC
TGTACTCTTGCCTCATAATATCCCCCCTAAACGGTTTTTTTGACCCTAAT
GATAACTCCTTTTTTATACAAATATCACTGCCCCTGTTTTACTTGCCTTG
CTCTTTTTTCCCCCCGCCCCCTACT
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTCCCTGGAATTCTGCACCAAAACCATCTGCTCCTGG
GCTTTTCTTGGTTGGGAGACTTTTACTGACTGCTTCTATTTCTTTAGGGG
TTATGGGACTGTTTGGATGGTTTATCTGATCCTGATTTAGCTTTGGTATT
TGGTATCTGTCTAGAAAATTGTCCACTTCATCCAGATTTTCCAGTTTTGT
TGAATATGGGCTTTTTGTAGTAGGACCTGATGATCTTTTTAATTTCCTCA
GTTTCTGTTGTTATATCTCCATTTTCATTTCTGATTTTGTTAATTTGGAT
TCTGTCTCTGTGCCCTCTGGTCAGTCTGCCTCCCACTTTATCTGTCTTGT
TGATTTTCTCGAAGAACCACCTCTTGGCTTTGTTGATTATTTGTATAGCT
CTTTTTGTTTCTACTTGGCTGATTTCAGCTCTGAGTTTATTTTCTGCTGC
CTACTCCTCTTGGGTGTATTTGCTTCTTTTTGTTCTAGAGCTTTCAGGTG
TTCTGTTAAGCTGCTAGCGTATGCTCTCTCCTGAGACACCCAAGAGTTTT
CCCTCTTGAACTGAACTCATTGTGCCCCCATAACTTTGCGTATGCCGTGC
CTTCATTTTCATTAAATTTCCAAAGCCTTCTAATTTCTTCTCTTTATTTT
CTCCCCTGACCCTTCCAGTTAGGCGGGTGTTTTCGCCTTTCCTTGTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_j08.b1 MSMg01no322_j08.b1 CHROMAT_FILE:
MSMg01no322_j08.b1 PHD_FILE: MSMg01no322_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:35 2005
         (287 letters)



>mm_chr12_26364412_26365098
          Length = 687

 Score =  547 bits (283), Expect = e-160
 Identities = 286/287 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attatatgacccctcttgacgatttttccaagattattaacatttaccctccaagaatat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 435 attatatgacccctcttgacgatttttccaagattattaacatttaccctgcaagaatat 376

                                                                       
Query: 61  catccacagcttcctcaagatgtgcatctctgtaccagtttgccgtcgttactgagattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 catccacagcttcctcaagatgtgcatctctgtaccagtttgccgtcgttactgagattt 316

                                                                       
Query: 121 catctgacagtatctatcctcagtagctttgcttttaaagagcctttttgcctttcattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 catctgacagtatctatcctcagtagctttgcttttaaagagcctttttgcctttcattt 256

                                                                       
Query: 181 ttctgttttgttgtgtgtccacatgtatggacatgtgtgtgaccccacatttgtggtgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ttctgttttgttgtgtgtccacatgtatggacatgtgtgtgaccccacatttgtggtgtg 196

                                                          
Query: 241 tgtgtgtgtgtgtgtgtatgaaagagagagagagaaagagagagaga 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tgtgtgtgtgtgtgtgtatgaaagagagagagagaaagagagagaga 149


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)