BAC Information

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BAC

Clone NameMSMg01-322P14
Chromosome12 (Build37)
Map Location 49,197,081 - 49,197,403
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039190, EG664891
Downstream geneGm1818, GA_x5J8B7W54VK-284379-285078, Olfr1399-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322P14.T7 (MSMg01no322_p14.b1)MSMg01-322P14.TJ (MSMg01no322_p14.g1)
ACCAG441524AG441525
length733732
length of high quality
(start - end)
660 (72 - 731)297 (77 - 373)
definitionCHROMAT_FILE: MSMg01no322_p14.b1 PHD_FILE: MSMg01no322_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:03 2005CHROMAT_FILE: MSMg01no322_p14.g1 PHD_FILE: MSMg01no322_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAACTTTTGCATCTTGAAGGGCTGAGTAGCACGTAAAGAAATGT
TCAAAGTCCTTAGTGATCAGAGACATGCAAATCAAAATCCTGAGATTCCT
CCTTATACCAGTCAGACTGGCTAAGACCAAAACCTTAGGTAACAACACAT
GTTGGAGAGGATGTGGAGAAAAAAGAACCCTCCTTTATTGCTGGTAGGAT
TGTAAATTGGTACAACCACTCTGGAAATAAATCTGGAGTTTCCTCAGAAA
ATTGGAAATAGATCTACCTGAAGACACAACTGTACCACTCTTGGGAATAT
ACCTAAAATATGCCCCACCATGCCACAGAGACACATGTTCCACTATGTTC
ATAGCAGCCTTATTTGTGATAGGCAGAAGCAGGAAATAACTTAGATGTCC
CAAGACAGAAGAATTGATACAGAAAATGTGGTTCATTTACACAATGTAAT
ACTACTCAACTATTAAGAATGAGGACATTGGGGAGTTGAGTCCATTGGTA
TTAAGAGATATTAAGGAAAAGTAATTGTTGCTTCCTATTATTTTTGTTGT
TAAAGTTGTCATTCTGGGCCTCAGCCTCAGCAGCAGTGGTCACAATCTGA
GTTCCGGGACTCCGCGGAACTTAGGAAATTAGTCTGAAGAGGTGAGAGGG
TGCGCCAGAGAACCGGACAGCTTCTGGGAAGGN
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTAATGTTTATATTGTCTTTG
TTATATACATTGATTTTATGTTTGCGTTTTCTTGGCTATCATTCAGGGAT
TTACATACTTCTTAAGGCATTTTTCCCCGTAATTGTATTGAACTGTTCCT
TGGGTCTTCTGTAAACATCTTGAGTTGTTTGATAAAAAAAAAAAAAAAAA
AAACCTGTGACTATTCTTTTAAATTTTTGTGTCCTGGAGTTCATGTCTGT
TATTACCATTGGCAAACAATTCTATGGGACTTGTAAGTCTTATAAAGAAG
ATGCTGGATTGATTATTTGTTTATATTGCCGCATTTTTGTGATGAAATCT
TTGCACAATGCCTTATGTTCTTAGATCTTGGTTTTATTATAGGCAAATAA
GGTTAGAACAGAAATGATGATATATGAGCATGTTGGCTCTAGATATGGAA
AATGGCTTGGATAGAATTAAGTTTGTGGGCAGTGAGGATTGAGCTGGTAT
AGAAAAGGTGCTTACTAGTTCAACCCTGAACTGTTAAAGTGACTTGGTGA
AAATGTTGGATATGACATGGGAGACTCCTATAGTTTGGGAGATACATAGG
GAGGATCCTGGCTGAAGCCTATTGTACAGTTGTTTTATAGACAGAGGAAG
GCCATCTAGGCTGGAAAACTGGTTAGAGAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_p14.g1 MSMg01no322_p14.g1 CHROMAT_FILE:
MSMg01no322_p14.g1 PHD_FILE: MSMg01no322_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:03 2005
         (297 letters)



>mm_chr12_49196881_49197577
          Length = 697

 Score =  497 bits (257), Expect = e-145
 Identities = 294/323 (91%), Gaps = 26/323 (8%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttttaatgtttatattgtctttgttatatacattgattttatgtttgcgttttcttggc 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 cttttaatgtttatattgtctttgttatatacattgattttatgtttgtgttttcttggc 260

                                                                       
Query: 61  tatcattcagggatttacatacttcttaaggcatttttccccgtaattgtattgaactgt 120
           ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 tatcattcagggacttacatacttcttaaggcatttttccccctaattgtattgaactgt 320

                                                                       
Query: 121 tccttgggtcttctgtaaacatcttgagttgtttgataaaaaaaaaaaaaaaaaa----- 175
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 321 tccttgggtcttctgtaaacatcttgagttgtttgataaaaaaaaaaaaaaaaaacaaaa 380

                                                                       
Query: 176 ---------------------aacctgtgactattcttttaaatttttgtgtcctggagt 214
                                |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaaaaaaaacaaaaaaaaaaacctgtgactattcttttaaatttttgtgtcctggagt 440

                                                                       
Query: 215 tcatgtctgttattaccattggcaaacaattctatgggacttgtaagtcttataaagaag 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcatgtctgttattaccattggcaaacaattctatgggacttgtaagtcttataaagaag 500

                                  
Query: 275 atgctggattgattatttgttta 297
           |||||||||||||||||||||||
Sbjct: 501 atgctggattgattatttgttta 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)