Query= MSMg01no324_f09.b1 MSMg01no324_f09.b1 CHROMAT_FILE:
MSMg01no324_f09.b1 PHD_FILE: MSMg01no324_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:38 2005
(588 letters)
>mm_chr12_34305275_34306263
Length = 989
Score = 1085 bits (561), Expect = 0.0
Identities = 579/585 (98%), Gaps = 1/585 (0%)
Strand = Plus / Plus
Query: 5 aattctctgcagtatccagatgacggatgatgtggcagggtgtgataacaagtacagctg 64
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aattctctgcagtagctagatgacggatgatgtggcagggtgtgataacaagtacagctg 264
Query: 65 cctctataaagatgaaatcgtaacaggctaaataataaatccccctgaaggaatatctta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctctataaagatgaaatcgtaacaggctaaataataaatccccctgaaggaatatctta 324
Query: 125 atgtgacaatccagtttctggattccaggttctaccatctactattctcacccaatgtat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgtgacaatccagtttctggattccaggttctaccatctactattctcacccaatgtat 384
Query: 185 aagtcagctttgtattattcctcatcttacttcttcaaatatgttaaacaaaatactctt 244
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 385 aagtcagctttgtattattcctcatcttacttcttcaaatatggtaaacaaaatactctt 444
Query: 245 aggtaatagtttagaaataa-cctacaaaatggcacaaatatctaataaagagtacactg 303
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aggtaatagtttagaaataaacctacaaaatggcacaaatatctaataaagagtacactg 504
Query: 304 aaggaaataattttcaagaacaattgtaccattagtaatggaatggtccaactttcttag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaggaaataattttcaagaacaattgtaccattagtaatggaatggtccaactttcttag 564
Query: 364 gttgtcttattttatttttttccaaaaacactttttattagatattttattaatttacat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gttgtcttattttatttttttccaaaaacactttttattagatattttattaatttacat 624
Query: 424 ttcaaatgctttcccgaaagtctcctatactctccccctgacctgctccccaacccaccc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttcaaatgctttcccgaaagtctcctatactctccccctgacctgctccccaacccaccc 684
Query: 484 actcctgcttcctggccctggcattgccctgtactggggcatataattttcacaagacca 543
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 actcccgcttcctggccctggcattgccctgtactggggcatataattttcacaagacca 744
Query: 544 agggctctccttccagtgatggccgactacacatcagctacacaa 588
|||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 745 agggctttccttccagtgatggccgactacacatcagctacacaa 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 989
Length adjustment: 10
Effective length of query: 578
Effective length of database: 979
Effective search space: 565862
Effective search space used: 565862
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no324_f09.g1 MSMg01no324_f09.g1 CHROMAT_FILE:
MSMg01no324_f09.g1 PHD_FILE: MSMg01no324_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:38 2005
(535 letters)
>mm_chr12_34464674_34465608
Length = 935
Score = 1027 bits (531), Expect = 0.0
Identities = 534/535 (99%)
Strand = Plus / Minus
Query: 1 tatgtgtgtctgattcaaagaaaactgaacacgtctttatttggaccttatacagtatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tatgtgtgtctgattcaaagaaaactgaacacgtctttatttggaccttatacagtatct 676
Query: 61 ttgatatattgacctacacaacacccacatctgatgtaaagtgtgttcagatttccagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ttgatatattgacctacacaacacccacatctgatgtaaagtgtgttcagatttccagag 616
Query: 121 agttaattacattcccatttttataaaaacatcaaaatgtcctcttttgttttcaggggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 agttaattacattcccatttttataaaaacatcaaaatgtcctcttttgttttcaggggc 556
Query: 181 taccaagaggacatagttttattttattaagaatacttttaattacgtgccgtatatatg 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 555 taccaagaggacatagttttattttattaaaaatacttttaattacgtgccgtatatatg 496
Query: 241 gctagtaactaactataataataaataaaaactttagataaaaaagtggttgctggaggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gctagtaactaactataataataaataaaaactttagataaaaaagtggttgctggaggg 436
Query: 301 ttgttaaacactgttccttaaaagaggcctgggtgggggaaatcccctgtttcattctgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ttgttaaacactgttccttaaaagaggcctgggtgggggaaatcccctgtttcattctgg 376
Query: 361 tgaacatccaagtgcagaacagacacacaaatctcataacatctggggtaggtaactgca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tgaacatccaagtgcagaacagacacacaaatctcataacatctggggtaggtaactgca 316
Query: 421 ttacagctgtaactaaccactctatccaccatgtgactccacaggcaaaaattaccgact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ttacagctgtaactaaccactctatccaccatgtgactccacaggcaaaaattaccgact 256
Query: 481 gtacagcctgtgcttgatctgcattttggttgtcatttcgcccccaattttacta 535
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gtacagcctgtgcttgatctgcattttggttgtcatttcgcccccaattttacta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space: 485625
Effective search space used: 485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
