BAC Information

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BAC

Clone NameMSMg01-325F12
Chromosome12 (Build37)
Map Location 52,621,694 - 52,621,834
singlet/doubletsinglet
Overlap genenone
Upstream genePrkcm, LOC100039517, LOC636070, LOC100039525, 6030408C04Rik, Scfd1, LOC620390
Downstream geneLOC100039578, Coch, Strn3, Ap4s1, Hectd1, EG544864, LOC100039476, Heatr5a, LOC676784, 6530401N04Rik, Gpr33, LOC100039627, Nubpl, Arhgap5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325F12.T7 (MSMg01no325_f12.b1)MSMg01-325F12.TJ (MSMg01no325_f12.g1)
ACCAG443257AG443258
length707723
length of high quality
(start - end)
39 (538 - 576)141 (108 - 248)
definitionCHROMAT_FILE: MSMg01no325_f12.b1 PHD_FILE: MSMg01no325_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:50 2005CHROMAT_FILE: MSMg01no325_f12.g1 PHD_FILE: MSMg01no325_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:09:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCATTCACACTGTTCACTGAAATTTGAGCATGACTCCCTTGGTAAG
TCAGGGCTGACCTTCCTATTGCTGAAAGTCTGGTATCGAATAACCAACTA
CCACTGTGATGACATTGACTGAGAATTGATATCTGTTTCTTTCATGAAAT
TGGTTGACCTCGTGTTTGTGTATAAATCTTTAGAATTGTAATCTCTTCTT
GGTGGACTCCTCTTTTAATGAATAGTGTCCTTACCTATCTTTTCTGATTA
GTTTTTTTTTTTCAAAGATGGATTTATTATTATACATAAGTACACTGTAT
CTGTTTTCAAAAGCACCAGAACAGGGCGTCAAATCTCATCACAGGGGATT
GTGAGCCACCATTCGGATGCTGGGATCTGAACTCAGGACCTTCAGAAAGA
CCAATCGGTGCTCTTAATCGCTGAGCCATCTCTTCAGCCCTTTCTGATTA
GTTTTTATTTAAAGCTGATTTTGTTAGATAAGATAGCTACACCTTCTTAA
TAATAAAGTGCATTTCTTGATGACAGCAGACAGATGGAGCCTCTTTTCTA
GTATAATCTGCTAATCTGTGTCATTGTATTGGGGACTTGAGAGCCTTGAT
ACTGAGGCTCATTATTGAACAGTGTTTATTACCCCTTGTTATTCTATTGT
GGTGGGT
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGACCTTTGGAAGAGCAGTCA
GTGCTCTTAACCACTGAGTCATCTTTCCAGCCCCAGGCTCCCCTAATTCT
AATTTTAAAACGAGTATTTCTCTGTTATATGGGTTTCCTTTGCTTCTCCA
TAGACTCTTGCACGTCTTTGGTTAACTTATTCTGGACTCTCCCTATTGGT
TCTCAAGATAACTTCTATCTCTATTGACATTTTGACCTCTAATCCTTTAG
TGATTGACATTAATCGGTTTTCTAAAACAAATCAGGCTTAGATTCCTAAC
AGACACTGAACTTAGATTCGTTTCAGCTAGCCTGGTTGACGATCATGCCC
CTGGGATCTTGCCTGCCTCCACCTCGCTAGCATTAGGATTGTATGCAGAT
ACTTTTACATGGGTACAGCCATCTAATCTCATCTCTGCATGCTTATGTGC
CAAGTACTTTACCCACTCTACTGGTTGGTTTTATGCGTCAATTTGACATA
TGCTGGAAGTATCACTTATAAAGGAGCTTCATGCGAGTACCTGTCTCCCA
CTAGATTCAGCTGCTTTGCCTTTTTTCAATTTCCGTACCACGCTTTTTCA
AGGTCCTTTTGAGCTTTGAGTCCCCTTTTCGCCCTTGTTAACCTCTGTCT
CCCCCTTATTATATTTATTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_f12.g1 MSMg01no325_f12.g1 CHROMAT_FILE:
MSMg01no325_f12.g1 PHD_FILE: MSMg01no325_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:09:50 2005
         (141 letters)



>mm_chr12_52621494_52622034
          Length = 541

 Score =  265 bits (137), Expect = 8e-76
 Identities = 140/141 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaccactgagtcatctttccagccccaggctcccctaattctaattttaaaacgagtat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 taaccactgagtcatctttccagccccaggctcccctaattctaattttaaaacgagtat 282

                                                                       
Query: 61  ttctctgttatatgggtttcctttgcttctccatagactcttgcacgtctttggttaact 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 281 ttctctgttatatgggtttcctttgcttctccatagactcttgcacgtctttggttaatt 222

                                
Query: 121 tattctggactctccctattg 141
           |||||||||||||||||||||
Sbjct: 221 tattctggactctccctattg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 541
Length adjustment: 8
Effective length of query: 133
Effective length of database: 533
Effective search space:    70889
Effective search space used:    70889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)