Query= MSMg01no331_g24.b1 MSMg01no331_g24.b1 CHROMAT_FILE:
MSMg01no331_g24.b1 PHD_FILE: MSMg01no331_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:20 2005
(467 letters)
>mm_chr12_107323696_107324562
Length = 867
Score = 613 bits (317), Expect = e-180
Identities = 337/345 (97%), Gaps = 4/345 (1%)
Strand = Plus / Minus
Query: 1 ccagactatagaaaatgacagttctaaacaccgacccctcacagaaactccaaatgccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ccagactatagaaaatgacagttctaaacaccgacccctcacagaaactccaaatgccag 284
Query: 61 tcacctggctgagggctcattcccgcaaagccacagagcaccatcccctgaaaaagtcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tcacctggctgagggctcattcccgcaaagccacagagcaccatcccctgaaaaagtcat 224
Query: 121 tgcatcccgtgatgacgcatattcaggactgctgggatggttcagtgggtaaaggcactt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 tgcatcccgtgatgacgcatattcaggactgctgggatggttcagtgggtaaaggcactt 164
Query: 181 gtcatcaaggcctgaggactcaagttccatccctactcttcatgccgggggtgggggtaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 gtcatcaaggcctgaggactcaagttccatccctactcttcatgccgggggtgggggtaa 104
Query: 241 agaattgacatcttatagcacatgtgagcacgcacgcgcgcgcgcacacacacagacaca 300
||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 103 agaattgacatcttagagcacatgtgagcacgcacgcgcgcgcgcacacaca--gacaca 46
Query: 301 cacagacacaca--ctcacacacacacactctcacacacaccatt 343
|||||||||||| | ||||||||||||| ||||||| |||||||
Sbjct: 45 cacagacacacagacacacacacacacacactcacacgcaccatt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space: 391649
Effective search space used: 391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no331_g24.g1 MSMg01no331_g24.g1 CHROMAT_FILE:
MSMg01no331_g24.g1 PHD_FILE: MSMg01no331_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:20 2005
(562 letters)
>mm_chr12_107156729_107157690
Length = 962
Score = 971 bits (502), Expect = 0.0
Identities = 547/562 (97%)
Strand = Plus / Plus
Query: 1 tatgtgttctcagtgggacactcttcctgtctttatggaggggccaggcgtcacctggcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgtgttctcagtgggacactcttcctgtctttatggaggggccaggcgtcacctggcc 260
Query: 61 ttcaatgaagcaggggactgtaggttgccgtggctctctggttttgggttccttaggcaa 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcaatgaagcaggggactgtaggatgccgtggctctctggttttgggttccttaggcaa 320
Query: 121 agcaagaatgtcaagtgataggtgagactgtggagtggggtgaggactggtgctggggca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcaagaatgtcaagtgataggtgagactgtggagtggggtgaggactggtgctggggca 380
Query: 181 gcggtgagaacagttgtcacgtggctctccctgtggaaggtccaaagtccagcacatgca 240
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcggggagaacagtcgtcacgtggctctccctgtggaaggtccaaagtccagcacatgca 440
Query: 241 ttatagttgttgttttgcccctctgctctctggaacactgttaatattttcccacggctg 300
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttacagttcttgttttgcccctctgctctctggaacactgttaatattttcccacggctg 500
Query: 301 ttagaggtcagtgccagggcattccaccacagaacatgcgcagccttcctcccgccccgc 360
||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 ttagacgtcagtgccggggcattccaccacagagcatgcgcagccttcctcccgccccgc 560
Query: 361 ccggccccttctctggctatcacagcagcagctctctctcctgcttcttgttctttccct 420
|| |||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||
Sbjct: 561 cccgccccttctctggctatcacagcagcggctccctctcctgcatcttgttctttccct 620
Query: 421 ggtccctgttagcaccctctgagcaacctcttctcatggctgtgcttgggccatctcatt 480
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 621 ggtccctgttagcaccctctgagcaacctcttctcatgcctgtgcttgggccatctcatt 680
Query: 481 gagcaacctgtttggtgatttccaaaggcgttccctactggggtcacctttaaacacatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gagcaacctgtttggtgatttccaaaggcgttccctactggggtcacctttaaacacatg 740
Query: 541 ccgttcccccactgcgcttgtc 562
||| ||||||||||| ||||||
Sbjct: 741 ccgctcccccactgctcttgtc 762
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
