BAC Information

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BAC

Clone NameMSMg01-331P09
Chromosome12 (Build37)
Map Location 70,132,173 - 70,296,289
singlet/doubletdoublet
Overlap geneLOC665967, LOC665973, Rps29, Ppil5, Rpl36al, Mgat2, 1110034A24Rik
Upstream geneLOC100040681, LOC100040696
Downstream gene9330151L19Rik, Pole2, Klhdc1, Klhdc2, Sdccag1, Arf6, LOC100040856, LOC100040862, Gm71, Sos2, LOC100040879, L2hgdh, Atp5s, Cdkl1, Map4k5, Spg3a, EG622339, Sav1, LOC100040999, Nin, ENSMUSG00000056391, Gm804, Pygl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331P09.T7 (MSMg01no331_p09.b1)MSMg01-331P09.TJ (MSMg01no331_p09.g1)
ACCAG448122AG448123
length738722
length of high quality
(start - end)		462 (72 - 533)573 (76 - 648)
definitionCHROMAT_FILE: MSMg01no331_p09.b1 PHD_FILE: MSMg01no331_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:57 2005CHROMAT_FILE: MSMg01no331_p09.g1 PHD_FILE: MSMg01no331_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,295,828 - 70,296,289)(70,132,173 - 70,132,745)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXATGCGAGAAATCCGCGGAA
TTCAGCCACTTTCCATAAAATCAGTCATTAGGATAAATATGAATTTTCTG
TAGTTACCATTTCCATATAGATATTTCCTTGAATTCCTGAGAATTCAAAA
TATTTGGTGTATCTTTTTTTCAGAATGAAGCAGAGGTAATAAATGAATGA
ATATAAGACCATGAATCTCAAATGTTAGCAAGGCAAGTTGCTCTAAATAT
AAAATTATTCTAATCCATTAGTTCTCTTGCAAATTCAAATATTGTTTAAT
TTAATTGAACATAACTTGAAACATATCTCTAATTTTTGTCCCCCCTCTTT
GGACCACCTAATAATCTTTACTTTGTAATTACAATATTATTTAAATAAAA
GCACAGAAGATAATTTTACTTGAGGTAACACTGAACCAATCTTATAAATT
AGTTTAAATATGGTTAAATGGCTAAATCTCACTTGACTGAATATAAACAA
ATTATATGGTGTTTGGATTTGGGTGATAGTGATGTTTAAATCCGCTCTTA
TTCCGTGACCACCCTTGTTTTTTTGACACGTTTTTTCTTCTTCTCACTTT
ATTATTGTCTTTTTTTACCCCCCACTATTTCCGATTCTTTTTTCCTCACA
ATTCTTACTCATTTCCCAAATGTTTTCTGCCATCATTCTTTCCCTATTCT
TTTCCTCCCTTTTTATTTTTTCCCCTTTCCCAGCTTTG

CCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAAGCCCAGGGTCGGCTCAAGGACT
ACCTAGGGCATTGGTGAAGGCCAGGAAACAAAGTTCAATTTTGCTTAGGT
ATTTGGCAAGTCATTGCTTGGAGACACCTATAACAAAACAATACTGAAAG
GAAGCACACAGATCCATTCACAAGGACAAAATTGGAGGATACGTGCTATG
GGATGCCACAGATCCAGGAGACTAAGTTTCCGTGAAAATCTTCGCCTTGG
GATTGCTTCCAGGTTTCTAAACCTGTCAAGCAAGTCACTACTGGAATGGA
TGTAGCAGAAAGACTGTGAATATAAGTCCAGAAGATAGTAAATAGGCTGA
TAGTGTTTTGCTAATGACACCAAATAATTACACAACCAAAGACAGACTTG
TCACCTGGTTGAGCCAGGTATCTTGGTGCACACCTACAATCCCAGCACTT
GGGAGGCTAAGATATGAAGGGACCAGCCTGAGCTACACAGAGGGACAACT
GGTTGAAATAGCATTACACAATGAAAAGACAGCAAACTATCATGTGTGAT
TGTGACAGTCAATCCCAGGTCTCTCCCTGATTGGGATGGAAAGAACGAGA
GTTCAAGGTGAGATAAGAAAGATTATAAAGCCAAGAATCCTAAATCCAGC
CTTACTGTGTTGTCAGTCACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_p09.b1 MSMg01no331_p09.b1 CHROMAT_FILE:
MSMg01no331_p09.b1 PHD_FILE: MSMg01no331_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:57 2005
         (462 letters)



>mm_chr12_70295628_70296489
          Length = 862

 Score =  878 bits (454), Expect = 0.0
 Identities = 460/462 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtcattaggataaatatgaattttctgtagttaccatttccatatagatatttccttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 cagtcattaggataaatatgaattttctgtagttaccatttccatatagatatttccttg 603

                                                                       
Query: 61  aattcctgagaattcaaaatatttggtgtatctttttttcagaatgaagcagaggtaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 aattcctgagaattcaaaatatttggtgtatctttttttcagaatgaagcagaggtaata 543

                                                                       
Query: 121 aatgaatgaatataagaccatgaatctcaaatgttagcaaggcaagttgctctaaatata 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 542 aatgaatgaatataagaccatgaatctcaaatgttagcaaggcaaattgctctaaatata 483

                                                                       
Query: 181 aaattattctaatccattagttctcttgcaaattcaaatattgtttaatttaattgaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 aaattattctaatccattagttctcttgcaaattcaaatattgtttaatttaattgaaca 423

                                                                       
Query: 241 taacttgaaacatatctctaatttttgtcccccctctttggaccacctaataatctttac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 taacttgaaacatatctctaatttttgtcccccctctttggaccacctaataatctttac 363

                                                                       
Query: 301 tttgtaattacaatattatttaaataaaagcacagaagataattttacttgaggtaacac 360
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 362 tttgtaattacaatattatttaaataaaagcacagaagataattttatttgaggtaacac 303

                                                                       
Query: 361 tgaaccaatcttataaattagtttaaatatggttaaatggctaaatctcacttgactgaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tgaaccaatcttataaattagtttaaatatggttaaatggctaaatctcacttgactgaa 243

                                                     
Query: 421 tataaacaaattatatggtgtttggatttgggtgatagtgat 462
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tataaacaaattatatggtgtttggatttgggtgatagtgat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no331_p09.g1 MSMg01no331_p09.g1 CHROMAT_FILE:
MSMg01no331_p09.g1 PHD_FILE: MSMg01no331_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:57 2005
         (573 letters)



>mm_chr12_70131973_70132945
          Length = 973

 Score = 1108 bits (573), Expect = 0.0
 Identities = 573/573 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagcccagggtcggctcaaggactacctagggcattggtgaaggccaggaaacaaagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagcccagggtcggctcaaggactacctagggcattggtgaaggccaggaaacaaagtt 260

                                                                       
Query: 61  caattttgcttaggtatttggcaagtcattgcttggagacacctataacaaaacaatact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caattttgcttaggtatttggcaagtcattgcttggagacacctataacaaaacaatact 320

                                                                       
Query: 121 gaaaggaagcacacagatccattcacaaggacaaaattggaggatacgtgctatgggatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaaggaagcacacagatccattcacaaggacaaaattggaggatacgtgctatgggatg 380

                                                                       
Query: 181 ccacagatccaggagactaagtttccgtgaaaatcttcgccttgggattgcttccaggtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccacagatccaggagactaagtttccgtgaaaatcttcgccttgggattgcttccaggtt 440

                                                                       
Query: 241 tctaaacctgtcaagcaagtcactactggaatggatgtagcagaaagactgtgaatataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctaaacctgtcaagcaagtcactactggaatggatgtagcagaaagactgtgaatataa 500

                                                                       
Query: 301 gtccagaagatagtaaataggctgatagtgttttgctaatgacaccaaataattacacaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtccagaagatagtaaataggctgatagtgttttgctaatgacaccaaataattacacaa 560

                                                                       
Query: 361 ccaaagacagacttgtcacctggttgagccaggtatcttggtgcacacctacaatcccag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaaagacagacttgtcacctggttgagccaggtatcttggtgcacacctacaatcccag 620

                                                                       
Query: 421 cacttgggaggctaagatatgaagggaccagcctgagctacacagagggacaactggttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacttgggaggctaagatatgaagggaccagcctgagctacacagagggacaactggttg 680

                                                                       
Query: 481 aaatagcattacacaatgaaaagacagcaaactatcatgtgtgattgtgacagtcaatcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaatagcattacacaatgaaaagacagcaaactatcatgtgtgattgtgacagtcaatcc 740

                                            
Query: 541 caggtctctccctgattgggatggaaagaacga 573
           |||||||||||||||||||||||||||||||||
Sbjct: 741 caggtctctccctgattgggatggaaagaacga 773


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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