BAC Information

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BAC

Clone NameMSMg01-334C07
Chromosome12 (Build37)
Map Location 82,246,892 - 82,247,138
singlet/doubletsinglet
Overlap geneSmoc1
Upstream geneActn1, Wdr22, Exdl2, 2310002D06Rik, Galntl1, LOC100041715, Erh, Slc39a9, 3830431G21Rik, Gm1568, 4933426M11Rik, Sfrs5, Slc10a1
Downstream geneSlc8a3, LOC100042143, LOC100042148, EG214321, Hspe1-ps2, Adam4, 1810020G14Rik, Synj2bp, Adam21, Med6, Ttc9, LOC100041821, Map3k9, Pcnx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334C07.T7 (MSMg01no334_c07.b1)MSMg01-334C07.TJ (MSMg01no334_c07.g1)
ACCAG449713AG449714
length721740
length of high quality
(start - end)
247 (46 - 292)250 (55 - 304)
definitionCHROMAT_FILE: MSMg01no334_c07.b1 PHD_FILE: MSMg01no334_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:28 2005CHROMAT_FILE: MSMg01no334_c07.g1 PHD_FILE: MSMg01no334_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTATATTCAGGACTACGCGGAATTCATCTCATTTTCATCACTACTGT
AACCCTCCCTTATATTCTTTGATGACACCAGTGCCCGTCCATCTTTCCTA
GGAATAAAGTGATGCCTGATAGAACTACAAAGTTCTTGCATTTGAAGGCA
CCAGATTTACGCGATTCAGGCTGGAGTACAGAAATCCGGGTAACTTCTTT
GATCATCCTGTTTGCAAACGTTTCTTAAGGAGCTACCCTGGGTCACTGCA
GGAGGGTGGAATGCTTGCTAGCCCCATCATCTCCTGAGAGGCATGTTTCC
TGGGGAAGGAGGTTCTTAAGTGGGCTGAAAGTTGTCCCTGTGCTGACCAG
CGAAAACACCTGAAGCTCGCTCCTATGCTAGAGGTCTACGCTATTTTCTA
CCCATCTCCACACTTCCTCTTCGATGGAAGATCAAACTGAATGCTGGGTT
TTGTAAGCACCTTCCCTTTGTCCTCAAGTCATGTATTCTTCTGACTAAAA
CGGAATCACCCACGGCTTTCCTAGGAATGCCTATGAAGGCGTATACAACT
TAATGAATAGTAGTTGAAGAGAATTAGATCACGGCTGATTAGAGGTTGCC
GGTCATAGATATTATTGACCCGGAGGTCCCCTGTTTCCTTATGAATCTTT
TGAAATACTTGCATTTCACTTATAATTTATCCCGCACTTCCCTATTAATC
GTTTCTTTGGTCAATAAAAGG
GGCGGCCGCCTGGCCTTCCCTACTGGGTGAACTATAGAAGGATTGCCGAA
AAAAAAGACATCCTGATCTACAAAGTGAGTTCCAGGACAGTCAGGGCTAT
ACAGAGAAACCCTGTCTGGAAAAAACCAAAAACCAACTAACAACCAACCA
ATAAACCCCCCAAAGAAAACAACACAAAAGACTTTTCTTAGCCAAGGGGT
TGGTTTGAGGGCATAGAGGCAGGAGGATTATCTCATATTCAAAGCTAGCT
TGGTCTACACAATAATTGAGGTCAGCCTGGATTAGAGAATGAAGCCCTGC
CTCTTTTTTAATAGAACAGGAAAAAAAAAAGACTACAAGGTCTAAACAAT
GATTTCAGAACAACAACTGGTCAGGGGAGAGAAAGAAAAGCAATGGAGGG
AAAAAAGGCTCTTTCTACCTCTGCCCCTACTTTCTTACACAGACTGGGGA
CAGTTACCTGGGTAGGTCTGGGAACTGAGCGTAGAGGACTTGCTCTCCTC
AGTAAGCGCTTGGAACACTGTCTGATAACCCAGACCCTGGGTGGCCTACC
TTTGCCATGCAAAGAAATGCACGATGTTTGCGCGTTTACGGTACAGTCCC
CTCCTGTATATCTCACGGGCATGTTCCATGGTTGGTCCTGATAGTCACTT
CCTGGCTGTTGCAGAAAAAAACCATTGCTCTGGTTAAGTTTCGATTAAAT
AACCTTTTCCTTACCACATTTAAACGATCTCTCGCCATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_c07.b1 MSMg01no334_c07.b1 CHROMAT_FILE:
MSMg01no334_c07.b1 PHD_FILE: MSMg01no334_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:28 2005
         (247 letters)



>mm_chr12_82246692_82247338
          Length = 647

 Score =  439 bits (227), Expect = e-128
 Identities = 242/247 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgtaaccctcccttatattctttgatgacaccagtgcccgtccatctttcctaggaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 447 actgtaaccctcccttatattctttgatgacaccagtgcccgtccatcttttctaggaat 388

                                                                       
Query: 61  aaagtgatgcctgatagaactacaaagttcttgcatttgaaggcaccagatttacgcgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aaagtgatgcctgatagaactacaaagttcttgcatttgaaggcaccagatttacgcgat 328

                                                                       
Query: 121 tcaggctggagtacagaaatccgggtaacttctttgatcatcctgtttgcaaacgtttct 180
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 327 tcaggctggagtacagaagtccgggtaacttctttgatcatcctgtttgcaaacgtctct 268

                                                                       
Query: 181 taaggagctaccctgggtcactgcaggagggtggaatgcttgctagccccatcatctcct 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 267 taaggtgctaccctgggtcactgcaggagggtggaatgcttgctagccccagcatctcct 208

                  
Query: 241 gagaggc 247
           |||||||
Sbjct: 207 gagaggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)