BAC Information

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BAC

Clone NameMSMg01-334O18
Chromosome12 (Build37)
Map Location 28,975,025 - 29,157,593
singlet/doubletdoublet
Overlap gene1110015M06Rik
Upstream geneSox11, LOC100043009, LOC669327
Downstream geneAllc, Colec11, Rps7, Rnaseh1, Adi1, Ttc15, Tssc1, 4833405L11Rik, LOC629608
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334O18.T7 (MSMg01no334_o18.b1)MSMg01-334O18.TJ (MSMg01no334_o18.g1)
ACCAG450299AG450300
length704709
length of high quality
(start - end)
554 (64 - 617)245 (57 - 301)
definitionCHROMAT_FILE: MSMg01no334_o18.b1 PHD_FILE: MSMg01no334_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:30 2005CHROMAT_FILE: MSMg01no334_o18.g1 PHD_FILE: MSMg01no334_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,975,025 - 28,975,578)(29,157,349 - 29,157,593)
sequence
XXXXXXXXXXXXXXXXXXXXXXAATGCCGAGCTCCGCGGAATTCTTTAAA
ATGCCCGAACAGAACAAGACTGACCAAAACTCTCAACGATGTCTGGCCAC
TTGTCTTAAATGCATGTCACCTAAGATCCTAATCCACCTCAGCCCGAGCC
TTGTATCAGTGTGATAAGCCTAGCTATGTGGGTTGAACTTTTCTCTCTCG
TCTAATCTTACCCACATGTATGTATGTGCACCATGTCAGTGTGCTGCCTA
AAGAGAACAGAAGTAGCCATCAGCTCCCTGGGACTAGAGTTACATGTGGC
TTAAGCCTTTATATCGATGCTAGGACTGAACCCCAGTCCTCTGCCAAAAC
TGCTGCTTGGTCACTCCTCTCTAGTCTCAATATATGAACATTTTAAGACT
TTAAATAATTGAAAAGGAGAGAAAAGAATTCTTTTGAATTTCTCCATCAG
TCCAGTGATATTGGACGGGGACAGGATGTACACTAAAAGCACGCTCTGGA
GTCTAGCTGTACTCTTGAGAGTCTGCTTGGCTATTTCATAGTCCCTATAA
GAGATCACATCTTGTAAATGACTCTGAAGTCCACAGAGACCAGAACCAGT
GTCACCTTCTTTGTCTGCCAAGCCATCATCAAGCTGTGTCAGGCTTGTTA
GAGAGTGAAGCCTGCTGTACTTTTAACAAGACATCCACTAAGCCTGAATG
GGGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAG
AAAATCAGTGAAACCAAGAGAAGGAAGTGGGGATTGTCCAAGGTTATTTT
GAAACCAAGACTCCAATGTCATTATTATCACAAAGCCCAGTATAAGCTGC
TCATTGTGGATTGGGTGTGTGCTGACTGAGGAGGGAATATGTGTGAGCAC
AACACAATTCCGCTGTTCTGAGTGAGCTCATATGTGTCAAGGTGTAACTG
GGGTGGAGAAAGTTGCCAATGATAAGTGGGAAGGTAGAGAAATTTAGCAG
ATATCTGTAGACAGACCATATTTAGAATGATGGACTGCCAGAGACTGTTA
AGAAGGATGCTAAGATATAAGATCTGTACAAAGGACAGTCGTTAATGGTC
AGCAGGAATTTGCCTGTCAGACACTATGCTGAAGGAACTGTGGGCAGAGG
GATTTGAGTATTAAGGATCGTGGCAAAGCTACAGTGAAATTTTCGAGGTT
TGGCTCATTGGGTGTGCATGGAGTCATAGGCTGGTGCGTGAGGAAGGAAA
GGAACATTCCGCGATACAGCAGGGATTGACTCTTTTGTCCTTTGTGCCTG
TGATGTAGCAACACCGATTTGCCTTATGTGATTATCAACCCCTAAGTCTT
CACGACTTTTGTTCGTCCATAGCTTTTCTTTTAATGACCACATAATTTCC
CACTGTCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_o18.b1 MSMg01no334_o18.b1 CHROMAT_FILE:
MSMg01no334_o18.b1 PHD_FILE: MSMg01no334_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:30 2005
         (554 letters)



>mm_chr12_28974825_28975778
          Length = 954

 Score = 1017 bits (526), Expect = 0.0
 Identities = 547/554 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaagactgaccaaaactctcaacgatgtctggccacttgtcttaaatgcatgtcaccta 60
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 201 acaagactgaccaaaactctcaacgatgtctggccacttgtcaaaaatgcatgtcaccta 260

                                                                       
Query: 61  agatcctaatccacctcagcccgagccttgtatcagtgtgataagcctagctatgtgggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatcctaatccacctcagcccgagccttgtatcagtgtgataagcctagctatgtgggt 320

                                                                       
Query: 121 tgaacttttctctctcgtctaatcttacccacatgtatgtatgtgcaccatgtcagtgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaacttttctctctcgtctaatcttacccacatgtatgtatgtgcaccatgtcagtgtg 380

                                                                       
Query: 181 ctgcctaaagagaacagaagtagccatcagctccctgggactagagttacatgtggctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgcctaaagagaacagaagtagccatcagctccctgggactagagttacatgtggctta 440

                                                                       
Query: 241 agcctttatatcgatgctaggactgaaccccagtcctctgccaaaactgctgcttggtca 300
           ||||   || ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 agccaccatgtcgatgctaggactgaaccccagtcctctgccaaaacagctgcttggtca 500

                                                                       
Query: 301 ctcctctctagtctcaatatatgaacattttaagactttaaataattgaaaaggagagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcctctctagtctcaatatatgaacattttaagactttaaataattgaaaaggagagaa 560

                                                                       
Query: 361 aagaattcttttgaatttctccatcagtccagtgatattggacggggacaggatgtacac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagaattcttttgaatttctccatcagtccagtgatattggacggggacaggatgtacac 620

                                                                       
Query: 421 taaaagcacgctctggagtctagctgtactcttgagagtctgcttggctatttcatagtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taaaagcacgctctggagtctagctgtactcttgagagtctgcttggctatttcatagtc 680

                                                                       
Query: 481 cctataagagatcacatcttgtaaatgactctgaagtccacagagaccagaaccagtgtc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctataagagatcacatcttgtaaatgactctgaagtccacagagaccagaaccagtgtc 740

                         
Query: 541 accttctttgtctg 554
           ||||||||||||||
Sbjct: 741 accttctttgtctg 754


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no334_o18.g1 MSMg01no334_o18.g1 CHROMAT_FILE:
MSMg01no334_o18.g1 PHD_FILE: MSMg01no334_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:30 2005
         (245 letters)



>mm_chr12_29157149_29157793
          Length = 645

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgaaaccaagagaaggaagtggggattgtccaaggttattttgaaaccaagactccaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 445 agtgaaaccaagagaaggaagtggggattgtccaaggttattttgaaagcaagactccaa 386

                                                                       
Query: 61  tgtcattattatcacaaagcccagtataagctgctcattgtggattgggtgtgtgctgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtcattattatcacaaagcccagtataagctgctcattgtggattgggtgtgtgctgac 326

                                                                       
Query: 121 tgaggagggaatatgtgtgagcacaacacaattccgctgttctgagtgagctcatatgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgaggagggaatatgtgtgagcacaacacaattccgctgttctgagtgagctcatatgtg 266

                                                                       
Query: 181 tcaaggtgtaactggggtggagaaagttgccaatgataagtgggaaggtagagaaattta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcaaggtgtaactggggtggagaaagttgccaatgataagtgggaaggtagagaaattta 206

                
Query: 241 gcaga 245
           |||||
Sbjct: 205 gcaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)