BAC Information

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BAC

Clone NameMSMg01-335K17
Chromosome12 (Build37)
Map Location 89,978,874 - 89,979,155
singlet/doubletsinglet
Overlap geneLOC100039261
Upstream geneLOC100042239, LOC100042786, BB287469, LOC100038964, LOC673658, LOC100038992, LOC100038982, LOC674027, LOC100039042, LOC100039052, LOC100039076, LOC100039087, LOC100039100, LOC100039191, LOC100039203, LOC627873, LOC100039162, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1
Downstream geneEG666915, Nrxn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335K17.T7 (MSMg01no335_k17.b1)MSMg01-335K17.TJ (MSMg01no335_k17.g1)
ACCAG450871AG450872
length761778
length of high quality
(start - end)
324 (63 - 386)282 (73 - 354)
definitionCHROMAT_FILE: MSMg01no335_k17.b1 PHD_FILE: MSMg01no335_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:30 2005CHROMAT_FILE: MSMg01no335_k17.g1 PHD_FILE: MSMg01no335_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCTATACGACTCACTATAGTTACAGGATACGCGGAATTCTACTAGAGAT
TTACCATTTAGCTTCTCATGTTGACATACAATTCAAACTGTACAATATAT
ACTTTAAGTTTAATTTAATATCATTTTCTGTTTGAGAAAGAATCTCACAC
TATGTAGCACATGATAGGTTTGAACTTAAGATCCCACCGCCTCAGCTTTC
TTGGTGGGATTACAGACATCTATAACCAACACCTGGCTTCAACTTTAAGT
GTGTGTTCTCACTGTATAGCCTTGCCGGCCTGGAATTCACCACACAGACC
AGGCTGGTCTGTAACTCAGACCAATCTTCCTGCTTCTTTCTCATGAGTGC
TAAGATTACCAATCCCGATTAACCATTTTGAAGAAAGTCACAAAAGTTTA
ATTAACACTCACAATTTCTACCAAACAAAATTTATATACATAAAACTAAT
GCTTCTAAAGGACTATGACCAATAATGTTTTTAGATTATCAGTCTCCCTC
ACATCCAAGCTGAAAGCACATTAAACATTTTTTGGTTTCTTTTCTCTTTT
TTTCTTCCCCATAGCGACCATATTGGTTAAAATGTGTTGTCACATTCTTC
TCCCCTTCCTTATACAGTTCCATTTTCACCTGTTATTGCCTGGTTACCAA
TTTACCTCTATTTCTTATCCACGCACCAGTCCTTTCTTCAAATTGGTCTT
TTTCCCCCTTTTTCCCTTTTTTCCCCTCTCTAATTATTTCTTTTTTTTTT
CGCTCTCCTTC
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATGATCCTTTCTCTCCTGTTCTTTCTTT
CTCTTTCTGGATCACAGCCATGGACAACTGTGCTACCCACTGCCCCTTTT
CAGCTACCCTTTTCTTTCCTAACACCCCTGTAGGGTTTTGAGAGGAGTAT
GGATTAAAGAAGTTAAGAATGGGGTTCATGGAAAAGGCGCATGGATAGTT
TTGGGCTTTTCAGGGGTCATGTGGTAAGAGTTAGGGTAGGAAGTAGGAAA
TACCATTGGGTAGTTTCTTGATTCGTGCTACTGTCTTTCAAGTGAGCTAT
GGAGTGTGAGGAGTCATATCAGGGGCTGAGGAACTTGGGCTTTTAGTAAT
AAATTTACATAGGAAGCACCTTATAAGCCTGGGGATGCCTTCTTTACACT
TCTGTGGGTTGATATGATCACCTTCAATCTAGAGATGGAGAATCAGGGCA
CAAGGATTTAACTGTTCATGTTTCCTACATAGTACACCTTGAACCATGAT
TTGTAATAAGGGTTACTAGGTTCTGGTACTTTGTGATCTCTCAGCTCCAG
GTTTACCCCCATCTCCACCCTATTTTTGTTTCCCGGTCTTTTTTACCCTT
ATTTGCTACCTCCCTGGAATCTACGCCTTTTTAATGCCCCCGCGCATCTG
TTTTGTCTTTTCCAGTTTTACCCCTCCTTTTCCCTCACGGCCCTTGTTAT
TTTTCATCTGTAATCCTCCCTCCCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_k17.g1 MSMg01no335_k17.g1 CHROMAT_FILE:
MSMg01no335_k17.g1 PHD_FILE: MSMg01no335_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:31 2005
         (282 letters)



>mm_chr12_89978674_89979355
          Length = 682

 Score =  507 bits (262), Expect = e-148
 Identities = 277/282 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgatcctttctctcctgttctttctttctctttctggatcacagccatggacaactgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgatcctttctctcctgttctttctttctctttctggatcacagccatggacaactgtg 260

                                                                       
Query: 61  ctacccactgccccttttcagctacccttttctttcctaacacccctgtagggttttgag 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctacccgctgccccttttcagctacccttttctttcctaacacccctgtagggttttgag 320

                                                                       
Query: 121 aggagtatggattaaagaagttaagaatggggttcatggaaaaggcgcatggatagtttt 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 aggagtatggatttaagaagttaagaatggggttcatggaaaaggcgcacggatagtttt 380

                                                                       
Query: 181 gggcttttcaggggtcatgtggtaagagttagggtaggaagtaggaaataccattgggta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggcttttcaggggtcatgtggtaagagttagggtaggaagtaggaaataccattgggta 440

                                                     
Query: 241 gtttcttgattcgtgctactgtctttcaagtgagctatggag 282
           |||||||||  |||||||||||||||||||||||||||||||
Sbjct: 441 gtttcttgaaacgtgctactgtctttcaagtgagctatggag 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)