BAC Information

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BAC

Clone NameMSMg01-341I18
Chromosome12 (Build37)
Map Location 37,907,253 - 38,118,098
singlet/doubletdoublet
Overlap geneA530016O06Rik
Upstream geneAnkmy2, 1700108M19Rik, Sostdc1, 4930579E17Rik, LOC638858, Meox2
Downstream geneLOC100043139, Dgkb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341I18.T7 (MSMg01no341_i18.b1)MSMg01-341I18.TJ (MSMg01no341_i18.g1)
ACCAG455315AG455316
length771773
length of high quality
(start - end)		529 (40 - 568)440 (69 - 508)
definitionCHROMAT_FILE: MSMg01no341_i18.b1 PHD_FILE: MSMg01no341_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:50 2005CHROMAT_FILE: MSMg01no341_i18.g1 PHD_FILE: MSMg01no341_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,907,253 - 37,907,777)(38,117,659 - 38,118,098)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
ATTGTACCAGGGTATGAAATAATTCATTTAGGCATGAAAATAATGAGAAA
TTGAAAGTTAGACGTAACCAAAGAGAGCAATAAGGTTTGTTGTGAAACTA
AAACACTTATAAATCAGACTTAGAGCTTATTATGACCAATACAATCATTA
TAATGGTAATTATTCTACATACACAAGATATTCACAAATGAAATGAGGCA
AGAGTAGGATGGAATATACTTCCCTGTGAATAATCCTAAAATGAAAAATT
GATTCCACAGAAGCAAGTAGGGAAGGTCATATGTTGATCAAAAGGACAAG
TTGTTGACATGGATTCAAATGATCCACTGGAGACAGAAGTCAATTGCTGA
GTATCAAATTCAGTACTGTCTATAAGGTACATAAATTCCCTAATATTGAG
CTACATGCCCCCCCCAGACAATAATTGGAACTTAGTATATTTTTCAGTAT
CTTAGTATTTGCCTACCTTGAAAATGATGCATAAACCATATAGACTTTGT
TCTTTTCCTGGAATTTAATATTTTAGGCAAATTAAAGTATTGTGAAATAT
CAACTAAGATCTTCCCGAACTGTTAATGATCCAGATAAAAAGGATTGTGG
ACAGGAAGGATGTAAAATGAATAAAATAAAAAATGGTTGGCTGCCCTCTT
TTCTTCCTTTTCCCCTTATCCCCCTTTTTCCCTTCTCCTTCCTTTCCTTC
CCTATTCCCCCGTTTTCCGCT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATAGTCAGCACAAACATTATCTAGTATGCAGG
AGATTGAGTTTTATCCAGACCTCAAGGAGAAAACCCCTGTAGTAAAAAAG
CTTACACTGCAAACAGCCACTGACTGATTTGATTAAGTCTGCATTCACTA
TGGCTCTGTTGTTGATCATCAACATCAGATTCATCCATTCTCTATTTACT
GTCTATGTATGGAGCTTGTTCTAAGATTCCTTGAGAGGACATAGAATAGA
ACAAAGCAAATTACAGTGTAGTAGCGGGGAATTTAATGATTTTTTTTCTA
ATGAGTGATAACATAAACTGTTACAGATTATTATAGAGATATTCCCTTCA
CTATCATCAACACTGCAGGGATTCTTACTTAAAATTTTAGGAAAAATATA
TAATTCATGAAATTTGTGGATCGACTTATGAAAAAAAAAACTTTTACTTG
TTCTGAGTTTGTTGATTTTTCAATACACATTATTTTCCTTGTGATGAGCT
TAAGTGGTTTGAGCCTTTGTGGGTTATTTCTTATTGCTAAACATCTGGGA
AAGAAATGTTCAAATAAAACTTAATTCTATCCTCCCCTAGTTCCCTGTGG
TTAATTCCAGAAACCCCCACTATTTAAACCAAGGGGGCGGCGGCCCATTT
AATTTCAACTTCCCTCCCCGGAACGATTTAGAAGCAAAAAACTTCTCATA
TATCGCCCGCCTGGCTACCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_i18.b1 MSMg01no341_i18.b1 CHROMAT_FILE:
MSMg01no341_i18.b1 PHD_FILE: MSMg01no341_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:50 2005
         (529 letters)



>mm_chr12_37907049_37907977
          Length = 929

 Score =  984 bits (509), Expect = 0.0
 Identities = 521/525 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaattgtaccagggtatgaaataattcatttaggcatgaaaataatgagaaattg 64
           ||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaattggaaaagggtatgaaataattcatttaggcatgaaaataatgagaaattg 264

                                                                       
Query: 65  aaagttagacgtaaccaaagagagcaataaggtttgttgtgaaactaaaacacttataaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaagttagacgtaaccaaagagagcaataaggtttgttgtgaaactaaaacacttataaa 324

                                                                       
Query: 125 tcagacttagagcttattatgaccaatacaatcattataatggtaattattctacataca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcagacttagagcttattatgaccaatacaatcattataatggtaattattctacataca 384

                                                                       
Query: 185 caagatattcacaaatgaaatgaggcaagagtaggatggaatatacttccctgtgaataa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caagatattcacaaatgaaatgaggcaagagtaggatggaatatacttccctgtgaataa 444

                                                                       
Query: 245 tcctaaaatgaaaaattgattccacagaagcaagtagggaaggtcatatgttgatcaaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcctaaaatgaaaaattgattccacagaagcaagtagggaaggtcatatgttgatcaaaa 504

                                                                       
Query: 305 ggacaagttgttgacatggattcaaatgatccactggagacagaagtcaattgctgagta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggacaagttgttgacatggattcaaatgatccactggagacagaagtcaattgctgagta 564

                                                                       
Query: 365 tcaaattcagtactgtctataaggtacataaattccctaatattgagctacatgcccccc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcaaattcagtactgtctataaggtacataaattccctaatattgagctacatgcccccc 624

                                                                       
Query: 425 ccagacaataattggaacttagtatatttttcagtatcttagtatttgcctaccttgaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccagacaataattggaacttagtatatttttcagtatcttagtatttgcctaccttgaaa 684

                                                        
Query: 485 atgatgcataaaccatatagactttgttcttttcctggaatttaa 529
           |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 685 atgatgcataaaccatatagacttcgttcttttcctggaatttaa 729


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no341_i18.g1 MSMg01no341_i18.g1 CHROMAT_FILE:
MSMg01no341_i18.g1 PHD_FILE: MSMg01no341_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:50 2005
         (440 letters)



>mm_chr12_38117459_38118298
          Length = 840

 Score =  820 bits (424), Expect = 0.0
 Identities = 436/440 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagtcagcacaaacattatctagtatgcaggagattgagttttatccagacctcaagga 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 640 atagtcagcacaaacattatctagtatgcaggagtttgagttttatccagacctcaagga 581

                                                                       
Query: 61  gaaaacccctgtagtaaaaaagcttacactgcaaacagccactgactgatttgattaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 gaaaacccctgtagtaaaaaagcttacactgcaaacagccactgactgatttgattaagt 521

                                                                       
Query: 121 ctgcattcactatggctctgttgttgatcatcaacatcagattcatccattctctattta 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 520 ctgcattcactatggctctgttgttgatcatcaacatcagattcatccattctctactta 461

                                                                       
Query: 181 ctgtctatgtatggagcttgttctaagattccttgagaggacatagaatagaacaaagca 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 460 ctgtctatgtatggagcttgttctaagattccttgagaggacacagaatagaacaaagca 401

                                                                       
Query: 241 aattacagtgtagtagcggggaatttaatgattttttttctaatgagtgataacataaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 aattacagtgtagtagcggggaatttaatgattttttttctaatgagtgataacataaac 341

                                                                       
Query: 301 tgttacagattattatagagatattcccttcactatcatcaacactgcagggattcttac 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 340 tgttacagattattatagagatattcccttcactatcagcaacactgcagggattcttac 281

                                                                       
Query: 361 ttaaaattttaggaaaaatatataattcatgaaatttgtggatcgacttatgaaaaaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ttaaaattttaggaaaaatatataattcatgaaatttgtggatcgacttatgaaaaaaaa 221

                               
Query: 421 aacttttacttgttctgagt 440
           ||||||||||||||||||||
Sbjct: 220 aacttttacttgttctgagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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