Query= MSMg01no342_l02.b1 MSMg01no342_l02.b1 CHROMAT_FILE:
MSMg01no342_l02.b1 PHD_FILE: MSMg01no342_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:17 2005
(574 letters)
>mm_chr12_7788940_7789917
Length = 978
Score = 1098 bits (568), Expect = 0.0
Identities = 574/578 (99%), Gaps = 4/578 (0%)
Strand = Plus / Minus
Query: 1 catgaaaggagtcagtaaaagcactctccgaggtatttcacacagttgtaaatatttgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 catgaaaggagtcagtaaaagcactctccgaggtatttcacacagttgtaaatatttgtc 719
Query: 61 aaataaccctttagggtgaaaaggaagctcacctaatgatggtgtgactataaccttgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 aaataaccctttagggtgaaaaggaagctcacctaatgatggtgtgactataaccttgag 659
Query: 121 tcacactgcttagg----tatatatatatatttctcatttaaacttcagtctcatttcag 176
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 tcacactgcttaggtatatatatatatatatttctcatttaaacttcagtctcatttcag 599
Query: 177 ggctcccaaagatggactatttgttctcttcccaatgttaaataaataaataaatcttta 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ggctcccaaagatggactatttgttctcttcccaatgttaaataaataaataaatcttta 539
Query: 237 tctgctttccactattaacaaacaaacaagagggcatgacataggagagctgaaacctgg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tctgctttccactattaacaaacaaacaagagggcatgacataggagagctgaaacctgg 479
Query: 297 catccatgtacatgcacacatatgtgtgtaccccaccacatgtatgaatatactattcac 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 catccatgtacatgcacacatatgtgtgtaccccaccacatgtatgaatatactattcac 419
Query: 357 ctttctaaatctaaaataaataatatgcctgtactttagcagaaatgaactaaaaactaa 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ctttctaaatctaaaataaataatatgcctgtactttagcagaaatgaactaaaaactaa 359
Query: 417 aagtagacagtaagatataatagtcatacataaaatatctagaaatgaaaagtgtagaat 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 aagtagacagtaagatataatagtcatacataaaatatctagaaatgaaaagtgtagaat 299
Query: 477 tgctttacaagaaacagttaagacaatattaaaaaataagtccaaacagttggactaatg 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tgctttacaagaaacagttaagacaatattaaaaaataagtccaaacagttggactaatg 239
Query: 537 gagagaaatttcatatctaggaatgtataccccagcac 574
||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gagagaaatttcatatctaggaatgtataccccagcac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 978
Length adjustment: 10
Effective length of query: 564
Effective length of database: 968
Effective search space: 545952
Effective search space used: 545952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no342_l02.g1 MSMg01no342_l02.g1 CHROMAT_FILE:
MSMg01no342_l02.g1 PHD_FILE: MSMg01no342_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:17 2005
(532 letters)
>mm_chr12_7750369_7751306
Length = 938
Score = 913 bits (472), Expect = 0.0
Identities = 522/548 (95%), Gaps = 16/548 (2%)
Strand = Plus / Plus
Query: 1 tcatggggatcggcagtttt----------aagaaggtccatcctacattagaaacctca 50
|||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 191 tcatggggatcggcagttttgcacaatggtaagaaggtccatcctacattagaaacctca 250
Query: 51 cctctgatgtccagagtctgtcttccctcccagaatgcagtactgtctcttatttgtgac 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 cctctgatgtccagagtctgtcttccctcccagaatgcagtactgtctcttatttgtgac 310
Query: 111 tttcaactaaaagccaaatctcacagcttaaaaattgccaggaactgatcaccttctcaa 170
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 311 cttcaactaaaagccaaatctcacagcttaaaaattcccaggaactgatcaccttctcaa 370
Query: 171 cacacctagtgtcagctcttgaggcaagcacatctaggggcactccatctgatttccttc 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cacacctagtgtcagctcttgaggcaagcacatctaggggcactccatctgatttccttc 430
Query: 231 ttatagatctttgtatttgaaggcattgacagcatcactagtaagattacgcgtgtaact 290
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 431 ttatagatctttgtatttgaaggcattgacagcatcactagtaagattactcatgtaact 490
Query: 291 tgtgttctaagcaataacctaaaccagggtcttctactgcc------ttgtttaaccacg 344
||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 491 tgtgttctaagcaataacctaaaccagggtcttctactgcccagcaattgtttaaccacg 550
Query: 345 gaattaaattagcttattttagtcactctttgcatggctatggacccaggagcaaatcaa 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gaattaaattagcttattttagtcactctttgcatggctatggacccaggagcaaatcaa 610
Query: 405 gaacgccttagaagaaatctgtgaaagtggaacttagctggaagttctacagaaggtaac 464
|||||||||||| ||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 611 gaacgccttagaggaagtccgtgaaggtggaacttagctggaagttctacagaaggtaac 670
Query: 465 aaaacagaggcaaagagtcatcgaaggttcccaaaagcctgcattacaggcatggtccct 524
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 671 aaaacagaggcaaagagttatcgaaggttcccaaaagcctgcattacagggatggtccct 730
Query: 525 agcctgtg 532
||||||||
Sbjct: 731 agcctgtg 738
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 938
Length adjustment: 10
Effective length of query: 522
Effective length of database: 928
Effective search space: 484416
Effective search space used: 484416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
