XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGCAGGATCCGCGGAAT
TCAGGGAATATTCATAAGATTATGAAGTATCCGTATGGTGTGAATGCACA
TTTTCCTCTTTTCACAAATTAATGTCTAGATCCCTAAGCTTCAGACTCTT
AGTTGTATATAAATCATTGTAATAGCACACATCATACACGTACACATACA
TATATGTATGTATACACACACATATCAATAAGCTTTTTGGTGAAAAATGA
TAGACCATGAGGTACCTAGAGAAAAGACTTTGAGTCATTAAGCTAATCAG
TAATAAACTTCTGAATGGAAATTTTATCCATACCTATTTGAGACTAGCAT
TATGGAAGGAAACAATATTCTCTCAAAAATGCCGTTCACTTTTTCTTCTA
AATAAATGATGATGGTAACGTATATAGAGCTTCTTCTATTCTCATACATT
TTCAAGAAAGGAGGGCCATCATTTAGGAAGATAGTGCAATTATCTAATGA
CATCCTCTGGTCTATATTTTGGGAAGACTTTATAATGAGGAACATATTCC
CCACTTTGGAAATATTGCGATGAATGATGCCTGAACCAAGGAGCATACTC
TTCCTATATAAGAAAATATCCTCAAATATGGTCTTGTGGTTCCTGTACTA
AACGGATCCCTTTGCTTGCTATAATATAAAATTTCATCTTTCTTATTCCC
AAATTTTGTGGAATTTGTCGGCCTTTAATTTTCCTACATTCTATATTCGC
CCTTTN

GGGGCCCCCCCCCTCCCATTAANGCACCAANAAAAACCCCCAAACCTTTT
CCCTCTCAACCCCCTTTTTAGGNNAATTTNNTTCTNAACCCCCCCCCCCC
CANCCCCCNNNNNNNNNNNANAANNCCCCCCCCCCCCNCCANNAANAAAA
ACCCCACCCACCCCCCCCCCCNNCNCCATGTAGTTTTTTTTTTTTTTTTT
TTCTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTCTTTTTTTTTAAGAATTAGNNTTTNCCNNNNNNNCNNNCNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCCNCNCNNCNNNNNNNCNNNNCCCCCN
NCCCCCCCCCCNCCCCCCNCCCCCCCCCCCNCCNCCCCCCCCCCNCCCCC
CCCCCCCCCCNCNCCCCCCCCCCCCCCCCCCCCCCCCCCCNCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNCCCCCCNCCC
CCCCCCCCCCCCCCCCNCCCNCCCCCCCCCCCCCCCCCCCNCCCCCNCNC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNNCCCCCCCCCCCN
CCCCCCCCCCCCCCCCCCNNCCCCCCCCNCCCNCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCNNCCCCCCCCCCNNCCCCCTTTTTTTTTTTTT

Query= MSMg01no343_i06.b1 MSMg01no343_i06.b1 CHROMAT_FILE:
MSMg01no343_i06.b1 PHD_FILE: MSMg01no343_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:23 2005
         (491 letters)



>mm_chr12_97548128_97549017
          Length = 890

 Score =  835 bits (432), Expect = 0.0
 Identities = 465/476 (97%), Gaps = 1/476 (0%)
 Strand = Plus / Plus

                                                                       
Query: 16  gaattcagggaatattcataagattatgaagtatccgtatggtgtgaatgcacattttcc 75
           ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 216 gaattca-ggaatattcataagattttgaagtatccgtatggtgtgaatgcacattttcc 274

                                                                       
Query: 76  tcttttcacaaattaatgtctagatccctaagcttcagactcttagttgtatataaatca 135
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 275 tcttttcacaaattaatgtctagatccctaagcttcagactcttagtggtatataaacca 334

                                                                       
Query: 136 ttgtaatagcacacatcatacacgtacacatacatatatgtatgtatacacacacatatc 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ttgtaatagcacacatcatacacgtacacatacatatatgtatgtatacacacacatatc 394

                                                                       
Query: 196 aataagctttttggtgaaaaatgatagaccatgaggtacctagagaaaagactttgagtc 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aataagctttttggtgaaaaatgatagaccatgaggtacctagagaaaagactttgagtc 454

                                                                       
Query: 256 attaagctaatcagtaataaacttctgaatggaaattttatccatacctatttgagacta 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 attaagctaatcagtaataaacttctgaatggaaattttatccatacctatttgagacta 514

                                                                       
Query: 316 gcattatggaaggaaacaatattctctcaaaaatgccgttcactttttcttctaaataaa 375
           ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 515 gcattatggaaggaaacaatattctctcaaaaacgccgttcacattttcttctaaataaa 574

                                                                       
Query: 376 tgatgatggtaacgtatatagagcttcttctattctcatacattttcaagaaaggagggc 435
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || 
Sbjct: 575 tgatgatggtaacgtatatagtgcttcttctattctcatacattttcaagaaaggaaggt 634

                                                                   
Query: 436 catcatttaggaagatagtgcaattatctaatgacatcctctggtctatattttgg 491
           ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 635 catcatttaggaagatagtacaattatctaatggcatcctctggtctatattttgg 690


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 890
Length adjustment: 10
Effective length of query: 481
Effective length of database: 880
Effective search space:   423280
Effective search space used:   423280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)