BAC Information

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BAC

Clone NameMSMg01-344A08
Chromosome12 (Build37)
Map Location 3,411,275 - 3,411,693
singlet/doubletsinglet
Overlap geneLOC100043040
Upstream geneLOC668260, LOC668262, LOC668267, LOC668270, EG668274, LOC100041946, 1700012B15Rik, Rab10, Kif3c
Downstream geneAsxl2, LOC627245, Dtnb, LOC668197, Dnmt3a, LOC668289, Pomc1, C030014M07Rik, C330021A05Rik, Adcy3, Cenpo, 2410017P09Rik, Ncoa1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344A08.T7 (MSMg01no344_a08.b1)MSMg01-344A08.TJ (MSMg01no344_a08.g1)
ACCAG457186AG457187
length765738
length of high quality
(start - end)
290 (75 - 364)423 (76 - 498)
definitionCHROMAT_FILE: MSMg01no344_a08.b1 PHD_FILE: MSMg01no344_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:05 2005CHROMAT_FILE: MSMg01no344_a08.g1 PHD_FILE: MSMg01no344_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCACCAACTTTCGAAGAGTGTTCCTCTTTCTCCATATCCTCGCC
AGCATCTGCTATCACATGGATTTTTGATCTTAGCCATTCTGACTGGTGTG
AGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGA
TGTTGAACATTTTTTCAGGTGTTTCTCAGCCATTCAATATTCCTCAGTTG
AGAATTCTTTGTTTAGCTCTGAACCCCATTTTTAATGGGGTTATTTGGTT
TTCTGGAGTCCATCTTTTTTAATTTTTTATATATATTGGATATTAGACCC
CTATCTAATTTAGGATTGGTACAGATCCTTTCCCAATCTGTTGGTGACCT
TTTTGTCTTATTGACAGTATCTTTTGCCTTACAGAAGCTTTGCAATTTTA
TCAGGTCCCATTTGTCAATTCTCAATCTTACAGCACAAGCCATTGCTGTT
CTATTCTGAAATTTTTCCCCTGTGCCCATATCTTCGAGGATTTTTCCCAC
TTTCTCCTCTATAAGTTTCAGTGTCTCTGTGTTTTAGTGGAGTTTCCTTG
ATCCACTTTACCTTGTTTTTTTGTTCATTTAGATTAAATAGGATTCCCCT
TCGCCTCCACTCATTTTTTTTTTTTTCTTATCTTGTCTAACCCCTTTTCG
GTTTATAACCGCTTTTCTTCTTTTTTCTGACCTTATCTGATTCTAATCAC
TTCTTCTTCCTATTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGAAAATCACTATGTAATAAGTACGGTCTTCC
TGTTTGCTTTACCTCTCCCCCAGGGCCCTGTGGATGCCAGGCAAGCCTCA
AAACACTAGGTTATGTCAGCTTTTTTTCCCTAATTTTCACCATTTCTCTA
TTTGTTTGGCTTTGGAGGATAGACTCGGTTTGTGTGGACCCCCAGAATGG
AATCTCTTCCTCAGGACTCATACTTGAGTATGTGCTGCCCAAAGCACTAT
TAACAAGCCTTTCACACTGTGTCCATTCTTCAGTCAGCGAATGAATGACT
ATAATCTTTACTGATAAAGTGAGGAATGTTATAAATTATTCCAACTGGAT
TCCATTTTCTAGTTGATAAGACTTTTGTATAGGTGCCTTTGGGCATGGAT
AGGTCAGGTTTTTTGTTTTTGTTTTTCGAGACAAGGTTTCTCTGAGTACC
CCTGTCTGTCCTGGATCTCACTTTGTAGACCATGTTGGCCTCAATCTACA
TATCTCTGCCTGCCTCTGCTGCAATTAATGGTGTGTACTGACATCACCCA
GATAAATAGCTATTTTTAACTTGGTATTTGCTTGCTAATTTTCTTGAAGT
ACCGAATTGATTTTCCCTGATCCCTATTTGTAGCATCTTCTGATTCCTAT
GGCCACCTTTATTTATCTTCTTGATCTCTGTTACTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_a08.g1 MSMg01no344_a08.g1 CHROMAT_FILE:
MSMg01no344_a08.g1 PHD_FILE: MSMg01no344_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:05 2005
         (423 letters)



>mm_chr12_3411075_3411897
          Length = 823

 Score =  779 bits (403), Expect = 0.0
 Identities = 415/419 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactatgtaataagtacggtcttcctgtttgctttacctctcccccagggccctgtggat 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 cactatgtagtaagtacggtcttcctgtttgctttacctctcccccagggccctgtggat 560

                                                                       
Query: 61  gccaggcaagcctcaaaacactaggttatgtcagctttttttccctaattttcaccattt 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 559 gccaggcaagcctcaaaacactaggttatgtcagcttttttcccctaattttcaccattt 500

                                                                       
Query: 121 ctctatttgtttggctttggaggatagactcggtttgtgtggacccccagaatggaatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ctctatttgtttggctttggaggatagactcggtttgtgtggacccccagaatggaatct 440

                                                                       
Query: 181 cttcctcaggactcatacttgagtatgtgctgcccaaagcactattaacaagcctttcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cttcctcaggactcatacttgagtatgtgctgcccaaagcactattaacaagcctttcac 380

                                                                       
Query: 241 actgtgtccattcttcagtcagcgaatgaatgactataatctttactgataaagtgagga 300
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 actgtgtccattcaacagtcagcgaatgaatgactataatctttactgataaagtgagga 320

                                                                       
Query: 301 atgttataaattattccaactggattccattttctagttgataagacttttgtataggtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 atgttataaattattccaactggattccattttctagttgataagacttttgtataggtg 260

                                                                      
Query: 361 cctttgggcatggataggtcaggttttttgtttttgtttttcgagacaaggtttctctg 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cctttgggcatggataggtcaggttttttgtttttgtttttcgagacaaggtttctctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)