BAC Information

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BAC

Clone NameMSMg01-344O17
Chromosome12 (Build37)
Map Location 12,408,503 - 12,408,848
singlet/doubletsinglet
Overlap genenone
Upstream geneVsnl1, EG209550, LOC217390, LOC628327, LOC627110, LOC100043209, D12Ertd553e
Downstream geneLOC100043215, Mycn, EG668473, LOC628449, Ddx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344O17.T7 (MSMg01no344_o17.b1)MSMg01-344O17.TJ (MSMg01no344_o17.g1)
ACCAG457866AG457867
length746746
length of high quality
(start - end)
239 (74 - 312)346 (65 - 410)
definitionCHROMAT_FILE: MSMg01no344_o17.b1 PHD_FILE: MSMg01no344_o17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:15 2005CHROMAT_FILE: MSMg01no344_o17.g1 PHD_FILE: MSMg01no344_o17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGTTCCTGTCCCACAAGTTGAGCAGGGTAACTCAAAAATGCCTG
AAATGCCAGCCCCGGGGGGATGTGACACAGTCTACTGGTCTCTGTGGGCA
CCTGCACTTATGCGGTCACACACACACACACACACACACACACACACACA
CACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAATAAAATTAGTCTTTGAAAGAAAATTTCAT
TTCTCTCTAAAGGAATTTTTTTTATATTACCAGGCTAGAACAGAGGAACA
AAGAGCTGACCAATCTTGATCCACGATAATAACAGCAATTCAGCAGAAGC
AATCATGAACGACACTACCCCCTAGCCTTGTTATAAATACAAATATTGCT
TCTCAAGATCTCGTCTCGTGTCACGTTCTTTTGCAATCCTCATTTGTTTC
GATCCATGACGTAAAGAGATACCAGGCTTCATTCTCATTTGTTGACCTTA
ACACTTACTGTCCCTTATTACATGCCGCTTACCTTATTACCCCTCAACTT
TGTTCTACATTACCTGCCCTATACCTTTTTTATATACACATACATTTGTA
TTATTTAATTCATACTACATAAATCTATCGTACAACATATAATAATCTTT
ACATATACAACCATCATGTTGCTTATATTATAATTCTCAATAACCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCTCCCACCAAAGAGCTGTATCGAGTATTTGTCGGC
TGAAATTCATTTGAACGTAGATTCATCGGAAACATGTGTGGCCACAAAAG
CAGCCCAGAGGAACAGAGGAGTGGGGGCGGGGAAGAGCGGGGTTGTCAAG
GAAGCCCTTCCTTTTGTTTTAACCGATCAGACTTGTCCTCGAAGGGGCTT
TGGCTCTTTGATGAGAGCCTCTGTTCTTTGTGACCAGTCTGCACCTCTTT
AGCTTCCCCAGATTTTGTTTCCCCTAAATAACCAGGACATTCAGTCCAAC
TCATGACCCTCCAGAGATCATGACCCTGCTACGGCTCTGTGCCTCAGAAG
ACAGGAACATTGGTTAATACCCAACCGACTTGAAGATAGTCATAATAATA
GATATGGTTAATTGCATCCATCCTGTTCTTTATAAATGACCTACTGTGTG
TATTGTATGTACTGTCGAATAGCTTTCCACATACTATCTCTGATCCTCAC
AGTGAACGGAAGAGATATGTCACCCTTCTTTTCCCATATGAAGATGTTGT
GTGTTACAGTTATGTTCTTTGTTATCCCTCATGATTCTTCTTGTTCTTTT
TTTATGTTTTATATCTCAACCCGTATTTATGTTATTATTTTGGTCCCCGT
CGGAGTTAATTATCTTTCTCACCGACCCTGCATGCCTGTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_o17.g1 MSMg01no344_o17.g1 CHROMAT_FILE:
MSMg01no344_o17.g1 PHD_FILE: MSMg01no344_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:15 2005
         (346 letters)



>mm_chr12_12408303_12409048
          Length = 746

 Score =  630 bits (326), Expect = 0.0
 Identities = 341/350 (97%), Gaps = 8/350 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcccaccaaagagctgtatcgagtatttgtcggctgaaattcatttgaacgtagattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcccaccaaagagctgtatcgagtatttgtcggctgaaattcatttgaacgtagattc 260

                                                                       
Query: 61  atcggaaacatgtgtggccacaaaagcagcccagaggaacagaggagtgggggcggggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 atcggaaacatgtgtggccacaaaagcagcccagaggaacagaggagtgggggaggggaa 320

                                                                       
Query: 121 gagcggggttgtcaaggaagcccttccttttgttttaaccgatcagacttgtcctcgaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagcggggttgtcaaggaagcccttccttttgttttaaccgatcagacttgtcctcgaag 380

                                                                       
Query: 181 gggctttggctctttgatgagagcctctgttctttgtgaccagtctgcacctctttagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggctttggctctttgatgagagcctctgttctttgtgaccagtctgcacctctttagct 440

                                                                       
Query: 241 tccccagatttt----gtttcccctaaataaccaggacattcagtccaactcatgaccct 296
           ||||||||        ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccccaga----acaggtttcccctaaataaccaggacattcagtccaactcatgaccct 496

                                                             
Query: 297 ccagagatcatgaccctgctacggctctgtgcctcagaagacaggaacat 346
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ccagagatcatgaccctgctacggctctgtgcctcagaagacaggaacat 546


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)