BAC Information

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BAC

Clone NameMSMg01-345B05
Chromosome12 (Build37)
Map Location 105,381,757 - 105,382,122
singlet/doubletsinglet
Overlap genenone
Upstream gene9030205A07Rik, Prima1, EG544888, Asb2, Otub2, Ddx24, D12Ertd647e, Ifi27, 1810023F06Rik, 8430415E04Rik, Serpina10, Serpina6, Gm46, Serpina1f, EG435316, Serpina1b, Serpina1d, LOC667951, LOC628801, Serpina1a, LOC667954, Serpina1c, Serpina1e, Serpina11, Serpina9, Serpina12, Serpina4-ps1, Serpina5, Serpina3a, Serpina3b
Downstream geneSerpina3c, LOC435318, LOC628883, Serpina3f, LOC667997, Serpina3g, Serpina3h, EG628900, EG238395, Serpina3k, EG628916, Serpina3m, Serpina3n, Gsc, Dicer1, Clmn, 4831426I19Rik, Snhg10, Glrx5, LOC100040301
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345B05.T7 (MSMg01no345_b05.b1)MSMg01-345B05.TJ (MSMg01no345_b05.g1)
ACCAG457984AG457985
length766282
length of high quality
(start - end)		474 (56 - 529)---
definitionCHROMAT_FILE: MSMg01no345_b05.b1 PHD_FILE: MSMg01no345_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:27 2005CHROMAT_FILE: MSMg01no345_b05.g1 PHD_FILE: MSMg01no345_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTCTTCTTTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTTGTAGGAGTATCATTAAGACTTAGGAAGTCATCT
ATTTGTCCATATAGTATCACTAAAAGGCAGTGCATCTTCATCTATCTGCA
TAAATCTGCGCAAAAGGAGTGGGCTAAAACGTAGTGATAGTTATATATGT
TTAATAATAACAGGGAAAGCTTATTAATAGCAGGAATGTTTCCTAAAATG
AATTATCATAAGCTTTGTGTATAAAAGCAAATATGTCTTGGATTAATCCA
AAGCAGACCATCTCAGGAAGCTCACCTGCTAGTTATTATTTTGTCCCATT
TTAGCTCCTGACAGATGTCCCAACTTGTTTATGTACCCAGCTTTGAGGAT
CTCATTCTAGGGATCCATGCCCTTGCCTCAGACAACAGGCATTTCCCTGT
CCTATTTCCATTTCCCACTATCATAAACTAATTCCCATGCAGTAGAGTTT
CTTCTGTGTTGGGGTTACTTATTGCCAAAACTTGTTGTCATGCCTAAGTA
TTTCCTGATGCCATTGTCCCATGTGACCTTTGGCAGTCTGGAGCTTTCCG
GAGCCTAATCCATATCTGGTGAGTACAAAGCTTATATTACCACCCCCCCC
CTGGAATACTGATAAAGGATTGAAAACATTTATGCCTTCTAAGACCCCTC
CACTTATACTAACCTGTTCTTTCCTCTCTTCTGTCTTGTCCCTTCTCGTT
TTTTATAAAATTTTTG

AATCGGTGGGGGGCGGGCGTGCACCCGACCCCTCCTTCTCCCTCCTACAT
TTTTAAAACTATCTACCATCCACCCTCCCATCCCCCTAATACCCCTAAAA
AAACACCTACCACCAACAAATCCTTCTAAAACTCCTTTCCCCAAAATTTT
CACCTCTNNNTTATAAGNTTCTCCTAAAGAATTCCAATTTCCATCCTTCA
GAAGTAGCCGGGGGCGCGCTCATAGGACCAAGAGATCGCATTCAGACAAC
TCGGTCTACTGGTGGTACAATGAACGATGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_b05.b1 MSMg01no345_b05.b1 CHROMAT_FILE:
MSMg01no345_b05.b1 PHD_FILE: MSMg01no345_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:27 2005
         (474 letters)



>mm_chr12_105381249_105382122
          Length = 874

 Score =  708 bits (366), Expect = 0.0
 Identities = 366/366 (100%)
 Strand = Plus / Minus

                                                                       
Query: 109 aaggagtgggctaaaacgtagtgatagttatatatgtttaataataacagggaaagctta 168
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 aaggagtgggctaaaacgtagtgatagttatatatgtttaataataacagggaaagctta 815

                                                                       
Query: 169 ttaatagcaggaatgtttcctaaaatgaattatcataagctttgtgtataaaagcaaata 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 ttaatagcaggaatgtttcctaaaatgaattatcataagctttgtgtataaaagcaaata 755

                                                                       
Query: 229 tgtcttggattaatccaaagcagaccatctcaggaagctcacctgctagttattattttg 288
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 tgtcttggattaatccaaagcagaccatctcaggaagctcacctgctagttattattttg 695

                                                                       
Query: 289 tcccattttagctcctgacagatgtcccaacttgtttatgtacccagctttgaggatctc 348
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 tcccattttagctcctgacagatgtcccaacttgtttatgtacccagctttgaggatctc 635

                                                                       
Query: 349 attctagggatccatgcccttgcctcagacaacaggcatttccctgtcctatttccattt 408
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 attctagggatccatgcccttgcctcagacaacaggcatttccctgtcctatttccattt 575

                                                                       
Query: 409 cccactatcataaactaattcccatgcagtagagtttcttctgtgttggggttacttatt 468
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 cccactatcataaactaattcccatgcagtagagtttcttctgtgttggggttacttatt 515

                 
Query: 469 gccaaa 474
           ||||||
Sbjct: 514 gccaaa 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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