BAC Information

Click to search

BAC

Clone NameMSMg01-345N15
Chromosome12 (Build37)
Map Location 60,639,105 - 60,639,594
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040183, Sec23a, Sip1, Trappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33, LOC665628, LOC238199, LOC665639
Downstream geneLOC665644, EG622488, LOC665665
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345N15.T7 (MSMg01no345_n15.b1)MSMg01-345N15.TJ (MSMg01no345_n15.g1)
ACCAG458577AG458578
length745732
length of high quality
(start - end)		494 (57 - 550)408 (86 - 493)
definitionCHROMAT_FILE: MSMg01no345_n15.b1 PHD_FILE: MSMg01no345_n15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:24 2005CHROMAT_FILE: MSMg01no345_n15.g1 PHD_FILE: MSMg01no345_n15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTTTTTTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTCTGATGCTCTAGTGCTATGGATTGAATTTAGCA
TGTTTATTAGAAGCAGCATTCGGCTGGCTAGCACCATAATTTTTAATAGA
TTTAGCAACTCAAGGAAGTTATCACAACACCGCTTCTCTTGCTTCACTTT
TGACTTTGATCGTCAGAAAATAAATTACTGCTTATGAACTCAGACTAATA
AACTATAAATTTTGGTATTAAAAGTTCAAATGACTAAAATACAGGTGTGA
TCCAGTAATAGAATATGTTCATAGCATATGGGCTCAATCTCCAGCACCAC
TAGTAAAAGGATTTCTTTTACTATTATTTAATCATTATGTATAAATGAAT
ATAATTGCATTTTTGTATTAAGAAAAACTTGTAAAACCTTATTGCAAAGG
ATACCTCACACTTTAGCTATGGCATATAGAGAAATATGGGACTGACCTGT
AACTTCTGCCCCACTGGCTAGATTTTAGACTCTGCTCTGCAGGTTGCTGA
AAGAGAANACGCTAANATGAATATTACAGGGGTAATTGACCACTTTTAAG
TTGGACTTGAGGCTCTGGGAGAAAACCCATGCATATTACTGTTAAGAACA
GGTCAATGGCCATCACTGGGGATATAACTGACCCTAAAGGAACCCCCTAC
CCTTGTTTGCTAATTGAAAAGCTGGCAAATTGCTTCTAAAAATTT

CTTTTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCACAGAAACATTT
ATATTTATTATTATATTCCATGATTTCTTTTGTCATCTGAGAAAAGGAAA
CTTCAATTAATGAAATGCCTCTCTCAGATTAGCCTTTATGCATGTCTGTG
GGCATTTTCTTGATTAATAACTGATGTGAGAGGGCTCAACCAATTTTTGC
AACAGTGACACCCCTGAACAGGTGGCCCTGAATCATATGAAAAAATTAGT
TGTGTAAATCTTCAGTAACAATCCAGTAAGAAACATTTCTCCATGGTTTC
TGCTTCAGTTCCTGCTCCCGGGCTTCTGTTTTGAATTTATTCCCTGGCTT
CCCTCAATGAAGTATTGTAATCTATAAGGCAAAATGTCTACTCCCTGAAC
TTGCTTTTGGTCATTGTGTTTTTATAACAACAATAGAAAGAATATTAGGA
CAGAAATTAATATCATTGAGTAGAGTACTGCTGTGACAGACATGACTGTG
TTTTTATGGGAGGCTGTATCCAATTTACAAACTTTGGACTAGTAAAGCCA
CTGAGTGTTCAGAGAGTAATAAACTGTTTTGTAACTTTACAAAGTATTGC
CGATAACAGTGTTGATTGACTCTAAGCTTGTATTGTATAGTTTCAGAATT
GAATTTTTCTTGTCCTTTTAATGAAATTTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_n15.b1 MSMg01no345_n15.b1 CHROMAT_FILE:
MSMg01no345_n15.b1 PHD_FILE: MSMg01no345_n15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:24 2005
         (494 letters)



>mm_chr12_60639021_60639914
          Length = 894

 Score =  948 bits (490), Expect = 0.0
 Identities = 490/490 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgatgctctagtgctatggattgaatttagcatgtttattagaagcagcatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 gaattctctgatgctctagtgctatggattgaatttagcatgtttattagaagcagcatt 515

                                                                       
Query: 65  cggctggctagcaccataatttttaatagatttagcaactcaaggaagttatcacaacac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 cggctggctagcaccataatttttaatagatttagcaactcaaggaagttatcacaacac 455

                                                                       
Query: 125 cgcttctcttgcttcacttttgactttgatcgtcagaaaataaattactgcttatgaact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cgcttctcttgcttcacttttgactttgatcgtcagaaaataaattactgcttatgaact 395

                                                                       
Query: 185 cagactaataaactataaattttggtattaaaagttcaaatgactaaaatacaggtgtga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 cagactaataaactataaattttggtattaaaagttcaaatgactaaaatacaggtgtga 335

                                                                       
Query: 245 tccagtaatagaatatgttcatagcatatgggctcaatctccagcaccactagtaaaagg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tccagtaatagaatatgttcatagcatatgggctcaatctccagcaccactagtaaaagg 275

                                                                       
Query: 305 atttcttttactattatttaatcattatgtataaatgaatataattgcatttttgtatta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 atttcttttactattatttaatcattatgtataaatgaatataattgcatttttgtatta 215

                                                                       
Query: 365 agaaaaacttgtaaaaccttattgcaaaggatacctcacactttagctatggcatataga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 agaaaaacttgtaaaaccttattgcaaaggatacctcacactttagctatggcatataga 155

                                                                       
Query: 425 gaaatatgggactgacctgtaacttctgccccactggctagattttagactctgctctgc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 gaaatatgggactgacctgtaacttctgccccactggctagattttagactctgctctgc 95

                     
Query: 485 aggttgctga 494
           ||||||||||
Sbjct: 94  aggttgctga 85


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |