BAC Information

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BAC

Clone NameMSMg01-346P05
Chromosome12 (Build37)
Map Location 85,801,645 - 85,801,987
singlet/doubletsinglet
Overlap geneLin52
Upstream geneDpf3, Wdr21, Zfyve1, LOC626950, Rbm25, Psen1, Papln, Numb, LOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1
Downstream geneChx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2, 1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346P05.T7 (MSMg01no346_p05.b1)MSMg01-346P05.TJ (MSMg01no346_p05.g1)
ACCAG459414AG459415
length751758
length of high quality
(start - end)
470 (37 - 506)346 (67 - 412)
definitionCHROMAT_FILE: MSMg01no346_p05.b1 PHD_FILE: MSMg01no346_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:46 2005CHROMAT_FILE: MSMg01no346_p05.g1 PHD_FILE: MSMg01no346_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTA
TTTATCACTAGGTTTAGACTTGAACTTAGAGATCTGCCTGCCTCTCCCCT
GAGTGCAGGTATTAAAGGCTTGTGCCACCATGCCCAACCTAGATGGGACC
TTTAAAAAAGAAGAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAG
AAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAGAAGAAAAGAAAAGAGAAA
AGAAAAGAAAAAGATGTGTGTGTATGTGTGTGTGTGTATACACGTACACG
CACTAGTGCACTCATGTAGTCGACTGACAACTTTCAGGAGTCCATTCTCT
CCTTTCCCAACCGAGTCCCTAGGAGTGAACTTAGATGGTCAGGCTTGGAC
AGCAGGTATCTTTACCCATTGATCCATCTCCCTGACCCAGAGGTGGGCAG
ACTCTTAGGGGTGATTAGGTCCAGAGTGCTCTGCCCTCTTGAATGGGCTG
AGTCAGTCCCAGCGTGGAGGAGCTAACTGTAAAGGCGGATGGTTCCATTC
TCCCTCCCTTCCCCGTCCTTCCTCTCCCTTCTTTTCTCCTTCTATCTCCT
GCATTCCCACCTTGGTATTTTGTCGCCTCTCTGCCCCATGACTCAGTGAG
AAATCTTTTCGTCAGATTCTCGCTCTCTTATTCTTACCCGCGCCCCAATT
TTGTTCCCTCCTGCGTATTAATAGTCCTCCCTGGCCCTGTGACGGTTCCC
G
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTGTGAGCAGTGAATACGATTTTTTGATAAATGAT
TTAGTTTAATCAGAATGAAAATTTAAGTTAAAACATTAATTTTATGACTT
TGCTCTTTTTTTAAAAAAAATATTTTTACAGTGTTAAGAGTCATGACGGT
AGTAGACTGAAGTTAAGGTGGAAGTCAGGGATCTTGAGCTATTTAAGCAG
CTGAAGCAGTCAAGAAAGTCCTGTGTGCTGGATACAGGGGAGACTGCAGA
ATGACAACAGAATCCCAGAACTCCTTGCTGGGATTTCAGAAGCGTGGTTA
CTATCACACCTAGCAGGGCCTTCGTAATTCAGGGGGAAATTTATAAGGGT
GTTGTTCCCCGCCCGCATGCTGAAATGCTGATTCCTTCCAATCCGTGAAA
AAATCGTCTCAAGGCATCTCATGTTCATTGCCTTGATAAACCTATGCACT
TATGCACCCATTGATGAGCTTTCGCCCATGAAATTTTTGACTGTCTATTT
GCTTGCTTTCGCTTCGTTTTCACTTTTTGTCCACCGTTCTCCTACCTTTT
TTTCCCTCCTTTTTGCCTACTCACTTGTATCCTTTGCCCCCTTTATCCCT
ATTTTTTACACCCTTTTTCTTTTATTTTTTTTCCCCCCCCTTTTTCTTTC
TTTGCCTCTTATTTTCCCCTATACCTGCTTCCCTGTATTGTTCCCACTTT
TCTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_p05.g1 MSMg01no346_p05.g1 CHROMAT_FILE:
MSMg01no346_p05.g1 PHD_FILE: MSMg01no346_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:46 2005
         (346 letters)



>mm_chr12_85801447_85802192
          Length = 746

 Score =  601 bits (311), Expect = e-176
 Identities = 335/343 (97%), Gaps = 2/343 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgagcagtgaatacgattttttgataaatgatttagtttaatcagaatgaaaatttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 tgtgagcagtgaatacgattttttgataaatgatttagtttaatcagaatgaaaatttaa 258

                                                                       
Query: 61  gttaaaacattaattttatgactttgctc-tttttttaaaaaaaa-tatttttacagtgt 118
           ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 259 gttaaaacattaattttatgactttgctcttttttttaaaaaaaattatttttacagtgt 318

                                                                       
Query: 119 taagagtcatgacggtagtagactgaagttaaggtggaagtcagggatcttgagctattt 178
           ||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||
Sbjct: 319 taagagtcatgacggtagtagactgaatttaaggtggaagtcaggggtcctgagctattt 378

                                                                       
Query: 179 aagcagctgaagcagtcaagaaagtcctgtgtgctggatacaggggagactgcagaatga 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aagcagctgaagcagtcaagaaagtcctgtgtgctggatacaggggagactgcagaatga 438

                                                                       
Query: 239 caacagaatcccagaactccttgctgggatttcagaagcgtggttactatcacacctagc 298
           |||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 439 caatggaatcccagaactccttgctgggatttcagaagtgtggttactatcacacctagc 498

                                                      
Query: 299 agggccttcgtaattcagggggaaatttataagggtgttgttc 341
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agggccttcgtaattcagggggaaatttataagggtgttgttc 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)