BAC Information

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BAC

Clone NameMSMg01-347M12
Chromosome12 (Build37)
Map Location 101,837,440 - 101,930,489
singlet/doubletdoublet
Overlap geneRps6ka5
Upstream gene2610021K21Rik, Tdp1, LOC100040041, Kcnk13, Psmc1, BC002230, Calm1, Ttc7b
Downstream geneLOC100040123, 9030617O03Rik, EG667148, Gpr68, 0610010D24Rik, LOC100040184, Smek1, 4930463M05Rik, Mylf-ps, 4932415G16Rik, Mtac2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347M12.T7 (MSMg01no347_m12.b1)MSMg01-347M12.TJ (MSMg01no347_m12.g1)
ACCAG460040AG460041
length761773
length of high quality
(start - end)		512 (49 - 560)502 (73 - 574)
definitionCHROMAT_FILE: MSMg01no347_m12.b1 PHD_FILE: MSMg01no347_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:52 2005CHROMAT_FILE: MSMg01no347_m12.g1 PHD_FILE: MSMg01no347_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,929,981 - 101,930,489)(101,837,440 - 101,837,941)
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGCCTTCTGCTGTGATGTTTTGCTTTCCTGGCTGTATCTTGT
GTTTCCTGTCACCATACTCTGCATGTAATTATACAGGCCACCAATTGAGC
AGGCATCCTGAAGGTTTCCTTGTATCAAGTGTTGTACTAAGCACTGACAG
AAGTAAGACAGACCCCCACCCCACCCCCGAGCCCAGGCACCACTGAGTCC
ATAAGAGACACTTAGGACTATTTACTGCCCTATTTACCCTTAAAAGTGAT
CAGATCTAAACATTAGGAAGTCTCAAGTAGATAGTGTACTGATGAGTACA
AGAAAACACCTGAAAGTTTGGTGATGTCAGACTGCTGAGGGTAGGGAAAA
AAACCCTGAAAGTCAGGAGAGACAGAAAATCACCAAGACAACAGAAGATT
GCAAGACTGGGAGTATAGACCTAGGCTGCCAGGAGCAAGGGGCAAGCAAG
CACAGGACACCACCAGGAAGGAACCAGCTTGGGAGAGAATGCATGTGAGT
CTGGAAGACTTTAAGTGAAATAATAAGTTGGCTGTATCTTATAAAGACTA
TAACCGACCCTTGTGAACATGGATTCCAGCCACCCGTGTACCGATTATTT
CACTACTTATTATCCTAATTGTATGCCTGCTTCCCACTTCTTTAACAAGG
GAAATTTTATAAAACCTTATTTCCTTTACTGCGCTATTTTCCCCTTTCCT
GTTTCCCACAA

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGAAGATTTTGAGCCACCATGTAGGTA
CTGAGCATCCAACCCAGTTCCTATACAAGAGCAGCAAGCAAGACATATCT
CTTCAGCTTCATTTGATATTACTTTTAAAGATGCCATCAAGACATTTCTA
AAACATCAAATGCTAAGTCAAGTTTTAGAAACTCAAAAATTATGATGAAT
TTAAAGGTATTGCTTCTCTTAATTTTTGTTTAGAAAACTAACCTTGTAGG
AAAATTTAGTAAAACTTTCATTTCCTCTTATAGGTGGCTCTGCTTCACAT
ATTTAAAATTATGCTGATTTCCTTCTCAGTGTGACACAATAAAAATCATT
TTTTTCCTGTTTTTTGTTTTGTTTTTCGAGACAGGGTTTCTCTGTTTAAT
TTGATAAAAAGTCCAAACTAGAGCAGGTAAGATGGCTTAGTAAACAAGGG
AGTTTAATACTTAGATTCCTTTAAGTTGTCCTCTCATCTCTACATGTGCA
TTGTGGCATATGTGTCCATACATGCCTACACAATGAATAGATGCAGACTA
ACTTCAAATTACAAGTCTTAAAAATCTGGATTTTCTTCTCTAAAACACTA
TCTGGAACTGTGACTTTTAGAGTACATGAAGTATACGTACTGCCCATTGC
CAAAATGATGTGACGGTCCTAACATTAACGGTTTTACTTTTCAACCTTTT
TTGCCGGACAAGAAACTTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_m12.b1 MSMg01no347_m12.b1 CHROMAT_FILE:
MSMg01no347_m12.b1 PHD_FILE: MSMg01no347_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:52 2005
         (512 letters)



>mm_chr12_101929778_101930689
          Length = 912

 Score =  969 bits (501), Expect = 0.0
 Identities = 507/509 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgccttctgctgtgatgttttgctttcctggctgtatcttgtgtttcctgtca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 ggaattctgccttctgctgtgatgttttgctttcctggctgtatcttgtgtttcctgtca 653

                                                                       
Query: 64  ccatactctgcatgtaattatacaggccaccaattgagcaggcatcctgaaggtttcctt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 ccatactctgcatgtaattatacaggccaccaattgagcaggcatcctgaaggtttcctt 593

                                                                       
Query: 124 gtatcaagtgttgtactaagcactgacagaagtaagacagacccccaccccacccccgag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gtatcaagtgttgtactaagcactgacagaagtaagacagacccccaccccacccccgag 533

                                                                       
Query: 184 cccaggcaccactgagtccataagagacacttaggactatttactgccctatttaccctt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 cccaggcaccactgagtccataagagacacttaggactatttactgccctatttaccctt 473

                                                                       
Query: 244 aaaagtgatcagatctaaacattaggaagtctcaagtagatagtgtactgatgagtacaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 aaaagtgatcagatctaaacattaggaagtctcaagtagatagtgtactgatgagtacaa 413

                                                                       
Query: 304 gaaaacacctgaaagtttggtgatgtcagactgctgagggtagggaaaaaaaccctgaaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gaaaacacctgaaagtttggtgatgtcagactgctgagggtagggaaaaaaaccctgaaa 353

                                                                       
Query: 364 gtcaggagagacagaaaatcaccaagacaacagaagattgcaagactgggagtatagacc 423
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 352 gtcaggagagacagaaaatcaccaagacaacagaagatggcaagactgggagtatagacc 293

                                                                       
Query: 424 taggctgccaggagcaaggggcaagcaagcacaggacaccaccaggaaggaaccagcttg 483
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tcggctgccaggagcaaggggcaagcaagcacaggacaccaccaggaaggaaccagcttg 233

                                        
Query: 484 ggagagaatgcatgtgagtctggaagact 512
           |||||||||||||||||||||||||||||
Sbjct: 232 ggagagaatgcatgtgagtctggaagact 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no347_m12.g1 MSMg01no347_m12.g1 CHROMAT_FILE:
MSMg01no347_m12.g1 PHD_FILE: MSMg01no347_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:52 2005
         (502 letters)



>mm_chr12_101837240_101838141
          Length = 902

 Score =  963 bits (498), Expect = 0.0
 Identities = 501/502 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaagattttgagccaccatgtaggtactgagcatccaacccagttcctatacaagagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaagattttgagccaccatgtaggtactgagcatccaacccagttcctatacaagagc 260

                                                                       
Query: 61  agcaagcaagacatatctcttcagcttcatttgatattacttttaaagatgccatcaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcaagcaagacatatctcttcagcttcatttgatattacttttaaagatgccatcaaga 320

                                                                       
Query: 121 catttctaaaacatcaaatgctaagtcaagttttagaaactcaaaaattatgatgaattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catttctaaaacatcaaatgctaagtcaagttttagaaactcaaaaattatgatgaattt 380

                                                                       
Query: 181 aaaggtattgcttctcttaatttttgtttagaaaactaaccttgtaggaaaatttagtaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaggtattgcttctcttaatttttgtttagaaaactaaccttgtaggaaaatttagtaa 440

                                                                       
Query: 241 aactttcatttcctcttataggtggctctgcttcacatatttaaaattatgctgatttcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aactttcatttcctcttataggtggctctgcttcacatatttaaaattatgctgatttcc 500

                                                                       
Query: 301 ttctcagtgtgacacaataaaaatcatttttttcctgttttttgttttgtttttcgagac 360
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 ttctcagtgtgacacaataaaaatcattttttttctgttttttgttttgtttttcgagac 560

                                                                       
Query: 361 agggtttctctgtttaatttgataaaaagtccaaactagagcaggtaagatggcttagta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agggtttctctgtttaatttgataaaaagtccaaactagagcaggtaagatggcttagta 620

                                                                       
Query: 421 aacaagggagtttaatacttagattcctttaagttgtcctctcatctctacatgtgcatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacaagggagtttaatacttagattcctttaagttgtcctctcatctctacatgtgcatt 680

                                 
Query: 481 gtggcatatgtgtccatacatg 502
           ||||||||||||||||||||||
Sbjct: 681 gtggcatatgtgtccatacatg 702


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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