BAC Information

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BAC

Clone NameMSMg01-347P20
Chromosome12 (Build37)
Map Location 69,892,926 - 69,893,423
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040681
Downstream geneLOC100040696, LOC665967, LOC665973, Rps29, Ppil5, Rpl36al, Mgat2, 1110034A24Rik, 9330151L19Rik, Pole2, Klhdc1, Klhdc2, Sdccag1, Arf6, LOC100040856, LOC100040862, Gm71, Sos2, LOC100040879, L2hgdh, Atp5s, Cdkl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347P20.T7 (MSMg01no347_p20.b1)MSMg01-347P20.TJ (MSMg01no347_p20.g1)
ACCAG460197AG460198
length772739
length of high quality
(start - end)
469 (45 - 513)498 (82 - 579)
definitionCHROMAT_FILE: MSMg01no347_p20.b1 PHD_FILE: MSMg01no347_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:08 2005CHROMAT_FILE: MSMg01no347_p20.g1 PHD_FILE: MSMg01no347_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:39:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTAATCCTCATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGATCTTTCAAAACTTTTATCATGAATGGGTGTTGGATCTTGTCA
AATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAG
TTTGTTTATATAATGGATTACATTGATGGATTTTCGTATATTAAACCATC
CCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTA
ATGTGCTCTTGGATTCGGTTAGCAAGAATTTTATTGAGGATTTTTGCATC
GATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGATCTT
TCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTTGGGT
AGAGTACCTTCTACTTCTATTTTGTGAAATAGTTTGTGCAGAATTGGAAT
TAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCATCTGGTC
CTGGGCTTTTTTTGGTTGGGAGACTATTAATAACTGCTTCTATTTCCTTA
GGCGATATGGGACCGTTTAAATGGTCAACTTGATCCTGTATTCACTTTGG
CACCCGTTATCTGNCCTGAATTTTGACTATTTTTTCCATGATTTTCAGTT
TCTGATGTATTAATCTCCTTTGCCACATACGACCTCGATTGACGTTTTTT
GCATTTTCTCCATTCAACGTCCTTTATTCCTCCTTCCTTTCTCTTTTTCA
ATTTTTTTTACTACTTCTTTTT
NNTTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGAGTTATTAAGTCTCC
CAACTTCTCCTAAGGGACTCTGTTTTGAGGGCAGGGTACAATTTCAACAT
TTTAGTGATTTCAAAATCTGACTAACCCTCACTTCTTGCTGTGTGCCACC
TTTAAGTCAGCCAGAGGTGAGATATTAGGGTGTTCCTAAGTTAGATGTTT
GCCTACTCTGCGCCCGTAATTAGCCTTCTATAAAATCAGTAGACAGTTTT
GCAAAGCCCCCTATGTACATCTCATTCCCTGAAATTTACCACCAATCCTT
TGTTTAATATTTGCTTATTCCAATCATGTGATTGTGTGAAACAGATGGAC
ACTGAACAACTGCTGCTGACTTTTGTGTCTGATCAATATTCTAGGGTCAA
GTTTTGGCTTACCAAGTGAGTTCTAAGTTAGCTCAACCCCTGCAAAGTGA
TCTTTTGTTGAGGATCGGTTCTAATACTTTGAATTAATCCAGCCCCTAAC
ATTGAGAATCTGCTGTCCAAATGCTGAAGGCCCATGTCTCCAGCTGTTTT
GTTGCTTGTTTGGTTGGTTGTTTGCCCGCCTAATTAATCCCCTTACATTT
ATTAGTTCTTGACCCGCCCCAGCTAATTTGAACCTGATTCCTTGCCTTGT
TCTTCCATTCCCGTACGACCACCATATTCTTCTCACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_p20.g1 MSMg01no347_p20.g1 CHROMAT_FILE:
MSMg01no347_p20.g1 PHD_FILE: MSMg01no347_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:39:08 2005
         (498 letters)



>mm_chr12_69892726_69893623
          Length = 898

 Score =  940 bits (486), Expect = 0.0
 Identities = 495/498 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgagttattaagtctcccaacttctcctaagggactctgttttgagggcagggtacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgagttattaagtctcccaacttctcctaagggactctgttttgagggcagggtacaa 260

                                                                       
Query: 61  tttcaacattttagtgatttcaaaatctgactaaccctcacttcttgctgtgtgccacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcaacattttagtgatttcaaaatctgactaaccctcacttcttgctgtgtgccacct 320

                                                                       
Query: 121 ttaagtcagccagaggtgagatattagggtgttcctaagttagatgtttgcctactctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaagtcagccagaggtgagatattagggtgttcctaagttagatgtttgcctactctgc 380

                                                                       
Query: 181 gcccgtaattagccttctataaaatcagtagacagttttgcaaagccccctatgtacatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcccgtaattagccttctataaaatcagtagacagttttgcaaagccccctatgtacatc 440

                                                                       
Query: 241 tcattccctgaaatttaccaccaatcctttgtttaatatttgcttattccaatcatgtga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcattccctgaaatttaccaccaatcctttgtttaatatttgcttattccaatcatgtga 500

                                                                       
Query: 301 ttgtgtgaaacagatggacactgaacaactgctgctgacttttgtgtctgatcaatattc 360
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 ttgtgtgaaacagatggacactgaacaattgctgctgacttttgtgtctgatcaatattc 560

                                                                       
Query: 361 tagggtcaagttttggcttaccaagtgagttctaagttagctcaacccctgcaaagtgat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagggtcaagttttggcttaccaagtgagttctaagttagctcaacccctgcaaagtgat 620

                                                                       
Query: 421 cttttgttgaggatcggttctaatactttgaattaatccagcccctaacattgagaatct 480
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 621 cttttgttgaggatcggttctaatactttgaattaatccagcccctaaaattgataatct 680

                             
Query: 481 gctgtccaaatgctgaag 498
           ||||||||||||||||||
Sbjct: 681 gctgtccaaatgctgaag 698


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)