BAC Information

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BAC

Clone NameMSMg01-349E08
Chromosome12 (Build37)
Map Location 114,723,474 - 114,724,051
singlet/doubletsinglet
Overlap geneIgh
Upstream geneA530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6, Pacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1
Downstream gene4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349E08.T7 (MSMg01no349_e08.b1)MSMg01-349E08.TJ (MSMg01no349_e08.g1)
ACCAG461167AG461168
length730826
length of high quality
(start - end)		582 (42 - 623)187 (80 - 266)
definitionCHROMAT_FILE: MSMg01no349_e08.b1 PHD_FILE: MSMg01no349_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:50 2005CHROMAT_FILE: MSMg01no349_e08.g1 PHD_FILE: MSMg01no349_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTGCCCTCTTGTGGAGAGGAAGAGATACAGATCTCCCTGCTGCTGTGGCG
CTGTGAAGGGTAGTGTGAGCTTCAGAAAGATGCCTTAAGATGTAGGAGAC
ACAGGCATCCCTCTTGGTAATTCATAGCTGAAAGCCTCTTCAACAGATAC
CTCAAGATTGGAGTTAGGTATTATCTAGGTAGTTCTCTGTATTGCACAGT
TAGATTTTAGCAGCTGAGGTGTTCTAGGAATTGGTACAGGACAGAGCTTC
ATATTACTTTAATTTGTATGTCAATTGGTTGTTTCTGTAAAGGAGCTTGG
AGGGAATTTATGTGAGCTGAGACAGCATATGAGCAGGGCAAATGGACAGT
GTTTCCCAGGCGTCACTGAGGAATGGCCTCAAGGGTGACAACTGCATTGG
TTGTGATTTGCTGTGGGGAGACTACAAAGTGACTGAGCTGTGAGACTGAG
GTACAGTGAGAACCTTCCTGCTGCAGGCATCTCCAGACTGCTGGGCCCTG
TGTGAGTGAATACAGCCAGGGACTGGGCTCAGAGGAACCTGTGTGCTTAG
ACTGCCCTGCAGAGTCAGTCAAGGGTTGCTGTTCTTCTAGAAGGTTCTCC
ATATTTCTGCCTTTCTGTAGATTGACTGGAGATTTTTTTTTTTTCCGGCT
GGTGTCAGAGACCATACCCTGAGAAAGTGG

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTGATTGGAGATTAGGCA
CAGCTGATTAGGGGAAAGCCTATCCCATCATCCAAGTACAATGAACTTTG
AGGAACAGAGACAGTTTATGCTTTTATAGTTTTATGGTAGAAAGGCAGGG
AGAAAGAAGAGAATGTGGAGAAAGAGGGAGAGAGAGAGAGAGAGAGAGGG
AGGGAGGGAGAGAGAGAGAGATAGTCCGTCTCTGCCCCCTTCCTCCTCTT
TTCTCCCCTCCGCTGCCCCCCGCCCTTTTTTTTTTTTTGCCCCCCCCCCC
GCGNCCCCGGCCGCCCTTCTTTTTCTCCCCCCCCCTGCGGAGGGTGGTCC
TTTTCTCCCTCTCCCGGCCCCCGCCCCTTTATCCTCTTTCTGCGGTTTCT
TCCCTTCCCCCTCTCCCTTCCCTCCCTTCCCATCTTCGCTCCCTTTTCCC
CCTTCTTCTCCTCCGCTTTTTTTTCTTCCTCCCCTTGGCTTTTTCTCCCT
CCCCTTCTTTCCTCCTGTTCTTCATGGCTCCCTCTTTTCTCTCTCCCACT
GTCTCTTTCTCTTCACGCCCTTTCCATCGCACTTTCTCTTCTATCCCTTT
CCGTTTCCTTCGCCCTTGTTTTCTTCCCTCCTTCTAGCTACTGTGCCCCC
CCCCTTTTACTTTTCCTCTCCTTCCTTTCTTTGTCCTTATTCCCTTTATA
ACTTTGCCCGCCTCTTTTCCTCCTGTCACACCCTATTTGCCTTCTTGGCG
GCGTCATCATGCCTCCATTCTCGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_e08.b1 MSMg01no349_e08.b1 CHROMAT_FILE:
MSMg01no349_e08.b1 PHD_FILE: MSMg01no349_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:50 2005
         (582 letters)



>mm_chr12_114723270_114724251
          Length = 982

 Score = 1118 bits (578), Expect = 0.0
 Identities = 578/578 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgccctcttgtggagaggaagagatacagatctccctgctgctgtggcgctgtg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgccctcttgtggagaggaagagatacagatctccctgctgctgtggcgctgtg 264

                                                                       
Query: 65  aagggtagtgtgagcttcagaaagatgccttaagatgtaggagacacaggcatccctctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagggtagtgtgagcttcagaaagatgccttaagatgtaggagacacaggcatccctctt 324

                                                                       
Query: 125 ggtaattcatagctgaaagcctcttcaacagatacctcaagattggagttaggtattatc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggtaattcatagctgaaagcctcttcaacagatacctcaagattggagttaggtattatc 384

                                                                       
Query: 185 taggtagttctctgtattgcacagttagattttagcagctgaggtgttctaggaattggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taggtagttctctgtattgcacagttagattttagcagctgaggtgttctaggaattggt 444

                                                                       
Query: 245 acaggacagagcttcatattactttaatttgtatgtcaattggttgtttctgtaaaggag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acaggacagagcttcatattactttaatttgtatgtcaattggttgtttctgtaaaggag 504

                                                                       
Query: 305 cttggagggaatttatgtgagctgagacagcatatgagcagggcaaatggacagtgtttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttggagggaatttatgtgagctgagacagcatatgagcagggcaaatggacagtgtttc 564

                                                                       
Query: 365 ccaggcgtcactgaggaatggcctcaagggtgacaactgcattggttgtgatttgctgtg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccaggcgtcactgaggaatggcctcaagggtgacaactgcattggttgtgatttgctgtg 624

                                                                       
Query: 425 gggagactacaaagtgactgagctgtgagactgaggtacagtgagaaccttcctgctgca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gggagactacaaagtgactgagctgtgagactgaggtacagtgagaaccttcctgctgca 684

                                                                       
Query: 485 ggcatctccagactgctgggccctgtgtgagtgaatacagccagggactgggctcagagg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggcatctccagactgctgggccctgtgtgagtgaatacagccagggactgggctcagagg 744

                                                 
Query: 545 aacctgtgtgcttagactgccctgcagagtcagtcaag 582
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aacctgtgtgcttagactgccctgcagagtcagtcaag 782


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space:   555984
Effective search space used:   555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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