BAC Information

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BAC

Clone NameMSMg01-349O01
Chromosome12 (Build37)
Map Location 82,661,792 - 82,662,074
singlet/doubletsinglet
Overlap geneAdam21
Upstream geneGalntl1, LOC100041715, Erh, Slc39a9, 3830431G21Rik, Gm1568, 4933426M11Rik, Sfrs5, Slc10a1, Smoc1, Slc8a3, LOC100042143, LOC100042148, EG214321, Hspe1-ps2, Adam4, 1810020G14Rik, Synj2bp
Downstream geneMed6, Ttc9, LOC100041821, Map3k9, Pcnx, Sipa1l1, LOC432675, EG666911
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349O01.T7 (MSMg01no349_o01.b1)MSMg01-349O01.TJ (MSMg01no349_o01.g1)
ACCAG461628AG461629
length774763
length of high quality
(start - end)
226 (74 - 299)283 (73 - 355)
definitionCHROMAT_FILE: MSMg01no349_o01.b1 PHD_FILE: MSMg01no349_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:37 2005CHROMAT_FILE: MSMg01no349_o01.g1 PHD_FILE: MSMg01no349_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGA
ATTCTGTAAGCTGACCTTAGAGGGATGTTCTGATGGACACTGAAAACCAG
AGTGTATACACAAATGCAGACAGTAGGTCAGTCTTGTGTTTTAGAGCGGG
AGGGGGGAAAAGACTACTTTTGTGGTTAGTGATTTTGTCAATGTGACACA
AGCTACAGTCATCTGAGAAGAGGAAATGTCAGTTGAGAAAACGCCTCTGT
CAAGTTGGTGGATAGGGGACTTGGCCCACTGTGGGTGGTGTTACCCAGGG
ACAAGAGGCCCTGGATTGTTTTTTGAAGCAAGCCAGTAAGCAGCACCCCT
CCACGGTCTCCGTTTCAGCTCTTGCCTCTAGGGTCCCACCTTGAGTTCCT
GCCCTGCCTGTCCTTCCTGACGCATTGCGATCTGTATTATAATGCTACGC
CTTCTTTCTCTCTTTGTGTTCTGGTTGCGCTTGTTTTCCCTCTCTTTATT
CTCTATTCTTTCTGGCGCGATATCATTTTTCTACAAACTTTTCTGTTGGC
TTGTGAAGCATTTTTGTTTATCTTGCCCTTTCTTCACCTTTTCTGCCCCT
TTTCTTTTTTCTTTTCTTCTTCCCTGATCTTTGTTGTGTTTATACTTCCA
ACCTTATACTTTTTTTTTTTTTTTTTTTTATAACTTCAACTTATCGTTTC
TTTTTTTATCATATTTCTTTGGTTTCTCTCTTCTCTTACTATCATCACTC
CTCGCTCGTCTTCCTATTGTTATN
CGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGCACCCCTGGCCCTGCTGGTCACCT
TCAGAGGGATAACTACTTCTGGAGAACTGAGGTATTGAGTGGACCCAGTC
TGTGAGAGGTCAATAAGGGATGGAAGTGCCTTAAGCCAGAGCAGCAAAAG
AGTGACTCTCATGAGTGTTCTAGCATCTGCACCTAACATTATGAAGCACT
CCATCCAGAGCTGATAAAGACAGGGTATGAGACACTTCTGTCCTGGCTCT
TCCCCTGGAGCAGGCCAGGTATTTTTGCTGCCATGTCGAGATTGTGTCCT
GGCAGAGCCTGAGCATCAGAGTTGCAGTGCTGAAAGTGTAAAAACAAAAG
AGTGCTCAGATAAGGTGAATAATTCAAGTGAGAAAATACCTACTGACTGG
CACATCAAGGCAATGGTTTGGGATTTGGTTTCTATGACTGTCATGAAGAG
TTCTGAAGTGAGGGCAGATAAGATAATATTGAGAACTTTCCCAGTATGAA
GATAAGTACTTACTCCAGTAGCTTATTCCTTATCGCTGGGATGAGGACTT
CCATATCATAAGCAACTAAAGCTTTTATTACGAGGCACAGTTTTGACTTT
ACCCTCGATTTTCTCCCCCTTAGCTTTTATTCCCACCCTTTTGGCCCTCC
TGCTTTAACCTCTTTGTATACGCGCCCTTAGCCGCACCGATTTCCACTTT
GCCATATACTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_o01.g1 MSMg01no349_o01.g1 CHROMAT_FILE:
MSMg01no349_o01.g1 PHD_FILE: MSMg01no349_o01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:37 2005
         (283 letters)



>mm_chr12_82661592_82662274
          Length = 683

 Score =  516 bits (267), Expect = e-151
 Identities = 279/283 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgcacccctggccctgctggtcaccttcagagggataactacttctggagaactgagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgcacccctggccctgctggtcaccttcagagggataactacttctggagaactgagg 260

                                                                       
Query: 61  tattgagtggacccagtctgtgagaggtcaataagggatggaagtgccttaagccagagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattgagtggacccagtctgtgagaggtcaataagggatggaagtgccttaagccagagc 320

                                                                       
Query: 121 agcaaaagagtgactctcatgagtgttctagcatctgcacctaacattatgaagcactcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcaaaagagtgactctcatgagtgttctagcatctgcacctaacattatgaagcactcc 380

                                                                       
Query: 181 atccagagctgataaagacagggtatgagacacttctgtcctggctcttcccctggagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atccagagctgataaagacagggtatgagacacttctgtcctggctcttcccctggagca 440

                                                      
Query: 241 ggccaggtatttttgctgccatgtcgagattgtgtcctggcag 283
           ||||||| | |  ||||||||||||||||||||||||||||||
Sbjct: 441 ggccagggaatagtgctgccatgtcgagattgtgtcctggcag 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)