BAC Information

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BAC

Clone NameMSMg01-349O15
Chromosome12 (Build37)
Map Location 54,696,192 - 54,696,840
singlet/doubletsinglet
Overlap geneNpas3
Upstream geneAkap6
Downstream geneEgln3, EG665239, EG665251, LOC665256
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349O15.T7 (MSMg01no349_o15.b1)MSMg01-349O15.TJ (MSMg01no349_o15.g1)
ACCAG461655AG461656
length1,377764
length of high quality
(start - end)
---652 (70 - 721)
definitionCHROMAT_FILE: MSMg01no349_o15.b1 PHD_FILE: MSMg01no349_o15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:40 2005CHROMAT_FILE: MSMg01no349_o15.g1 PHD_FILE: MSMg01no349_o15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAACCGCGCGAGAGGAAATAAGACACACTCGAGAATACTTACCACGCGCG
TGCTGCCGGCGGAATTTACGTGGTATAATATCGCCGCATGAGAATTACAC
TATATTGCTTGCTGTACGCAGATTTTATAACACTACCGACGTATTGACTT
AGCGCCATCAGCATATATACGGACTCGGATATAGTATGTTGTTGCGGCGC
ACGCAGACGCGGAAATTAGCGAGATGACGGCGGACTAAGATAATGTCGTG
AGGCCCACCGTTTATCAGGGACAGTTATGAACTCTACTCCGATTGTGTTA
TCGCGAGACCGGATATTCGCCTTTTATATGACGGCGGAGAATAGTAAAAG
AGCACTATATAANTCGAGATGATGAGTCATAGTGACACGCTATCTACGAG
TTGTAGCTACCTCAGATCGCCCCTGATTTTNATGCCACTTTACTACTCGT
CAATATACATCAGCCACTTGTTATTTAACCACGCACGTTTATTTATATAG
ATTTGAATATATAGTTATAACACACATACACACACTGTTACACCAACCCT
GGCGGTGTCAGCCACGTTGTTTTTTAGTACGAAGTGCCTCATACACCTTA
ACACGTGTTGCGTACACTGACGTCTGTGACACACCGCCTTTATCTCTCAT
GTTTTCCTCCTCCACTATTTTACACCAACTGTGGTGACATCAATACGTTT
ACAACTACTTAGAGTGATCTACACACAGCAAGTTTAGATTGGCATGCATT
ACGGACGTAGGTATGGTATCTAGTAGCGCGGACGATATGCGAGTGTGCGA
TGTATATGCGATATATGTATGATATATGTATACGCTTACAGGAGGTATAA
TGCGGCGGAGTGTTCCTGTATTATAATTATAAACGGAAATATCGAATTAT
ATATCGACGCGTAGACATTGTTNGTACGTGCAGCAACACGTACAAGATAT
ACACGATGGACAGCCAGCGTAGAATAGATCATAATATGAAACGATATGTA
AGAGTGTGTGCTTATAGTGCGATATACGTAATATGACTATAGAGACGTTT
TCGCCACGATAGTACTGAGTACAATCTGATTAAGATCATTTGCGACATTA
TGCATGCTTAGTGTGGTCGACGAATAGCACAATATATGATGTCGAACGAG
AAGTCAAAGTCGTGCGTGTCGTACTGAATACTCTCAGTGACCAGAATATA
CGGACGATTGTGTCTGTGATTACTGATATCTTGCATGTCACAAGCTTGTT
GAAATTGTTCGGTCATCGCAGTTTATATGTACTAGACATACCTAGAATAT
TGAGAGTATGAACACCATATATATGTAGCATTTCACATATTTGCGGACTC
CACGCTTGTNGACCTATATTATTCCAT
ATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCCTGATTGTAATATGAATGGATATTCAAGCT
CTGACACACTGAGAGTTAATGCTGTCTCCCAGTTGGTTTATTGAATCACA
GTGCCATCTAAAGCGATCTGCTAAGAGGGAAACCAGTCAGAATAAGTATT
TAGATACCAGCTTTCAGGGAGCCTCACTGGAGTGCAATCCCCAGCGGTGG
ACTTTGTAAATGAAATGTCCATCTCACTCCTCATCCACACCATGCTGGTT
GCTGGGGGACAAATGCGCTTGTCCTGCAAATTTAAAACCACGAGGGGGTG
TTATAAAAACCAACCTCTGCACATGCTACCAGGAGCTGTGACATTAATAG
GCATTGAATTCAAAAGGGTCAATTTCAATTACTCGATATGATTCTTGTGT
TCAGTTTTAAGTTATCAGAACTTTTAAACTCGGATCTGTACGCTGTGTCC
AACTTGATTATCCCTCAAGTGCATTGACCATGCGCCGCCGCCTCCATCAT
CACATCAGGGAATCAGGCACACTCTGGGACTTGAGAATAAGAATCTCTGT
CATTGTGATTTATTTTTCTTTAAGTATCCCTTCAGGTTAGGTTGCTATTT
CTTTTAGCCTTGCTTCTCTCTCCCATTTCGAACAGTCCCCATAATTTGTT
GAGCTCTATTCAAAGTCTGCAGAGCAGTGTTTCCAATATCTATAGTCAGA
GGGATAACATTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_o15.g1 MSMg01no349_o15.g1 CHROMAT_FILE:
MSMg01no349_o15.g1 PHD_FILE: MSMg01no349_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:40 2005
         (652 letters)



>mm_chr12_54695992_54697040
          Length = 1049

 Score = 1210 bits (626), Expect = 0.0
 Identities = 645/652 (98%), Gaps = 3/652 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgattgtaatatgaatggatattcaagctctgacacactgagagttaatgctgtctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgattgtaatatgaatggatattcaagctctgacacactgagagttaatgctgtctcc 260

                                                                       
Query: 61  cagttggtttattgaatcacagtgccatctaaagcgatctgctaagagggaaaccagtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagttggtttattgaatcacagtgccatctaaagcgatctgctaagagggaaaccagtca 320

                                                                       
Query: 121 gaataagtatttagataccagctttcagggagcctcactggagtgcaatccccagcggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaataagtatttagataccagctttcagggagcctcactggagtgcaatccccagcggtg 380

                                                                       
Query: 181 gactttgtaaatgaaatgtccatctcactcctcatccacaccatgctggttgctggggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gactttgtaaatgaaatgtccatctcactcctcatccacaccatgctggttgctggggga 440

                                                                       
Query: 241 caaatgcgcttgtcctgcaaatttaaaaccacgagggggtgttataaaaaccaacctctg 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 caaatgcgcttgtcctgcaaatttaaaaccacgaggaggtgttataaaaaccaacctctg 500

                                                                       
Query: 301 cacatgctaccaggagctgtgacattaataggcattgaattcaaaagggtcaatttcaat 360
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacatgctaccaggcgctgtgacattaataggcattgaattcaaaagggtcaatttcaat 560

                                                                       
Query: 361 tactcgatatgattcttgtgttcagttttaagttatcagaacttttaaactcggatctgt 420
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tacttgatatgattcttgtgttcagttttaagttatcagaacttttaaactcggatctgt 620

                                                                       
Query: 421 acgctgtgtccaacttgattatccctcaagtgcattgaccatgcgccgccgcctccatca 480
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 621 acgctgtgtccaacttgattatccctcaagtgcactgaccatgcgccgccgcctccatca 680

                                                                       
Query: 481 tcacatcagggaatcaggcacactctgggacttgagaataagaatctctgtcattgtgat 540
            |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 -cac--cagggaatcaggcacactctgggacttgagaataagaatctctgtcattgtgat 737

                                                                       
Query: 541 ttatttttctttaagtatcccttcaggttaggttgctatttcttttagccttgcttctct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ttatttttctttaagtatcccttcaggttaggttgctatttcttttagccttgcttctct 797

                                                               
Query: 601 ctcccatttcgaacagtccccataatttgttgagctctattcaaagtctgca 652
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 ctcccatttcgaacagtccccataatttgttgagctctattcaaagtctgca 849


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1049
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1039
Effective search space:   667038
Effective search space used:   667038
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)