BAC Information

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BAC

Clone NameMSMg01-350A17
Chromosome12 (Build37)
Map Location 31,100,371 - 31,100,740
singlet/doubletsinglet
Overlap genenone
Upstream geneMyt1l, LOC100043496, Pxdn, Tpo, Sntg2
Downstream geneTmem18, LOC100043055, Acp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350A17.T7 (MSMg01no350_a17.b1)MSMg01-350A17.TJ (MSMg01no350_a17.g1)
ACCAG461753AG461754
length754765
length of high quality
(start - end)		436 (52 - 487)372 (80 - 451)
definitionCHROMAT_FILE: MSMg01no350_a17.b1 PHD_FILE: MSMg01no350_a17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:51 2005CHROMAT_FILE: MSMg01no350_a17.g1 PHD_FILE: MSMg01no350_a17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGGTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTGTTCTGCTCTGAGCCCCATTTTTTAATGGGGTTATT
TGATTTTTTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTA
GTCCCCTATCTGATTTAGGATAGGTAAAGACCCTTTCCCAATCTGTTGGT
GGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAG
TTTCATTAGGTCTCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTG
CTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTC
CCCACTTTCTCCTCTATTAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTT
CCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCG
ATTCGCATTCTTCTACATGATAACAACCAGTTGTGNCNNNNNNNNNTGNN
GANNATGNNGNCTNNCNTCCTCNGANANANNNACNANNNNACCAAGGNAA
TACTTTTTACCACCCTCANATCAATCTCCTCCCCTATTTTTTTTTTTCCC
CCCTATCATTCTATCTTCNTTTCTCCCCTTTTCCCCTTCTCTTTTTTCTC
TTTTTCTTTTTCTCTTCCTTTTTTCCTNTTTTTCCTTCTTACTCTCTTTT
TCTTCTCTATTCCCTCCCCTTTTCCCACCCTCTTACTTCTATTCTTCCCC
TCCN

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTAGAAATTTTGTGCTAAAT
CCTCAGAATCTTTTGAATGATTCCTTTCAAACACTGAAATTATTTCTACT
GCTATTTTGTAGCACCCCACAGCGAGATCATCAGCATTAAGAATAGGTCA
TTGATGACCGACTAGGGCATCCTCTGCTGCATATACAGCTAGAGCCATGA
GTCCCTCCATGTGTTTTCTTTGATTGTTGGTTTAGTCCCAGGGAGCTCTG
GGGGTACTGGTTGGTTCATATTGTTGTTCCTCCTATGGGCAATAGGAGGA
GAGACCCTTGGTCCTGTGAAGGTTCCATGCCCCAGTATAGGAGAATGCCA
GGGCCAGGAAGTGGGATGGGTAGAGTGGGGAGCAGGTGAAGGGGGAAGGN
NATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNN
NNNNNNNNNNNNNTNNNTTTTTTTTTTTTTTTTTTTNNTTTTTNNTTTTT
TTTTTTTTTTTTTTTTNNTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTNTTTTTTTTTTNTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTT
NTTTTTTTTTTTTTTTTTTTTTTTTTNNNTTTTTTTTTTTTGTTNTTTTT
TTTTTTTTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_a17.g1 MSMg01no350_a17.g1 CHROMAT_FILE:
MSMg01no350_a17.g1 PHD_FILE: MSMg01no350_a17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:51 2005
         (372 letters)



>mm_chr12_31100171_31100942
          Length = 772

 Score =  716 bits (370), Expect = 0.0
 Identities = 370/370 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attagaaattttgtgctaaatcctcagaatcttttgaatgattcctttcaaacactgaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attagaaattttgtgctaaatcctcagaatcttttgaatgattcctttcaaacactgaaa 260

                                                                       
Query: 61  ttatttctactgctattttgtagcaccccacagcgagatcatcagcattaagaataggtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatttctactgctattttgtagcaccccacagcgagatcatcagcattaagaataggtc 320

                                                                       
Query: 121 attgatgaccgactagggcatcctctgctgcatatacagctagagccatgagtccctcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attgatgaccgactagggcatcctctgctgcatatacagctagagccatgagtccctcca 380

                                                                       
Query: 181 tgtgttttctttgattgttggtttagtcccagggagctctgggggtactggttggttcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgttttctttgattgttggtttagtcccagggagctctgggggtactggttggttcat 440

                                                                       
Query: 241 attgttgttcctcctatgggcaataggaggagagacccttggtcctgtgaaggttccatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attgttgttcctcctatgggcaataggaggagagacccttggtcctgtgaaggttccatg 500

                                                                       
Query: 301 ccccagtataggagaatgccagggccaggaagtgggatgggtagagtggggagcaggtga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccccagtataggagaatgccagggccaggaagtgggatgggtagagtggggagcaggtga 560

                     
Query: 361 agggggaagg 370
           ||||||||||
Sbjct: 561 agggggaagg 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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