NNTTTCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGA
TCCGCGGAATTCCAAGAGAATATACTTAAAGTTGGACAAAATAAGGAAGT
CAATACTAAATATGAGCAAAAGAATTCAATAAATAGAAGTACTGAGAAAT
GACAGATTATTAGATTAAAATGAACATCTCCATAAATCAAACAAAACTCT
CAATGAAAGGCAAAACATTTATGGGTAAGAAAAATATCAAGGCTGAAAAA
CAAGGTAGATGAATTATAATATCCAAACAATATCAAAGAAGAATTAATCA
GAAAGTATCATAATGTGCAGTGTATGCGACAAGATCAAAATATAAACTGT
ATGAATCCCAGGTATAAAAGAAGACAAACTATAGGCTAAAATCACAGAAG
AAATATTCAACAAAATCATAGTAGAAAATTTATCTTATATATGGAAATAC
ATGGCTATCCATATACATAAGCCACTTAGAATGTCAAATAGATGTGATAA
ATGCTTCCATTTATTGTTATAGTTAAACTATACTGTACTAACTGTATAGA
ATAAAGAAATAATAAAATTTGTGGGGATGGACTCCACAAATCCACTCTCC
CCAGTATAGGGCATTTCATCTAAGGCATCTCACTTTGAATCCTGAGAGTC
TCTCACTTCCCAAGTCTCTGGTACATTCTAGAGGGACCCCTGTCCTACCT
CCCACGGTTTCCTGTTTCCATTCTTTTTCGTGACCCTCAGTAGAGC

NGGGCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTCAGAGAGCTCAGGTG
GTGATAGTTTAACTATCTAAACATTGAGCCCACATTGAATGAGCTCAAAA
GTTGATCAACGTTAAATACCACCTTAAATGAATTCTGTGACATCTCTCTA
AACATGATAAAATTGAGTTAACAGTATGTGAACCAGTTAGACCCCTTTCT
ATTCTACACAGCATGTGTTGAGAATGAGCTGACGATGATCCATGGTCAGA
ATTCATTGAAACAAAATGATTAGCATTATATTGAAATATTTCAAAGTCAC
CCAAAGTGAGAGTTGGTTGACATAACAAAACATGGAGACTATTGAATTAT
TTTCATCCATTAAAAAAAGTTTGTCTAAAGTTTGGAGCTGAGACAAAAGG
ATGGACCATCTAGAGACTGCCCCACCTGCGGGTCCGTCCCACAATCAGCC
ACCAAACGCATACACTATTGTATATGCCAGCAAGATTTTGCTGACAGGAC
CCTGATATAGCTGTCTCTTGTGAGGCTATGATGGGGCCTGTCAAACTCAG
AAGTGGATGCTCACAGTCTAGCTTTTGGATGGAACACAGGGCCCCTAATG
CCATAGCCCGAAAAAGTATCCAAGGATATGAAATCTTTTTCCTCTATCCT
TTAATTTGTATAATCTTATTTAACTAACTATTTACCCCTTAATTTTCTT

Query= MSMg01no350_c02.b1 MSMg01no350_c02.b1 CHROMAT_FILE:
MSMg01no350_c02.b1 PHD_FILE: MSMg01no350_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:58 2005
         (689 letters)



>mm_chr12_97532613_97533701
          Length = 1089

 Score =  880 bits (455), Expect = 0.0
 Identities = 476/483 (98%)
 Strand = Plus / Minus

                                                                       
Query: 18  attccaagagaatatacttaaagttggacaaaataaggaagtcaatactaaatatgagca 77
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 attccaagagaatacaattaaagttggacaaaataaggaagtcaatactaaatatgagca 424

                                                                       
Query: 78  aaagaattcaataaatagaagtactgagaaatgacagattattagattaaaatgaacatc 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aaagaattcaataaatagaagtactgagaaatgacagattattagattaaaatgaacatc 364

                                                                       
Query: 138 tccataaatcaaacaaaactctcaatgaaaggcaaaacatttatgggtaagaaaaatatc 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tccataaatcaaacaaaactctcaatgaaaggcaaaacatttatgggtaagaaaaatatc 304

                                                                       
Query: 198 aaggctgaaaaacaaggtagatgaattataatatccaaacaatatcaaagaagaattaat 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 303 aaggctgaaaaacaaggtagatgaattataatatccaaacaatatcaaagatgaattaat 244

                                                                       
Query: 258 cagaaagtatcataatgtgcagtgtatgcgacaagatcaaaatataaactgtatgaatcc 317
           |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 243 cagaaagtatgataatgtgcggtgtatgcgacaagatcaaaatataaactgtatgaatcc 184

                                                                       
Query: 318 caggtataaaagaagacaaactataggctaaaatcacagaagaaatattcaacaaaatca 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 caggtataaaagaagacaaactataggctaaaatcacagaagaaatattcaacaaaatca 124

                                                                       
Query: 378 tagtagaaaatttatcttatatatggaaatacatggctatccatatacataagccactta 437
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 123 tagtagaaaatttatcttatatatggaaatacatggctatccatatacagaagccactta 64

                                                                       
Query: 438 gaatgtcaaatagatgtgataaatgcttccatttattgttatagttaaactatactgtac 497
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 63  gaatgtcaaatagatgtgataaatgcttccatttattgttataattaaactatactgtac 4

              
Query: 498 taa 500
           |||
Sbjct: 3   taa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space:   732641
Effective search space used:   732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no350_c02.g1 MSMg01no350_c02.g1 CHROMAT_FILE:
MSMg01no350_c02.g1 PHD_FILE: MSMg01no350_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:58 2005
         (505 letters)



>mm_chr12_97351244_97352148
          Length = 905

 Score =  922 bits (477), Expect = 0.0
 Identities = 498/505 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttcagagagctcaggtggtgatagtttaactatctaaacattgagcccacattgaatg 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttcagagagctcatgtggtgatagtttaactatctaaacattgagcccacattgaatg 260

                                                                       
Query: 61  agctcaaaagttgatcaacgttaaataccaccttaaatgaattctgtgacatctctctaa 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 agctcaaaagttgatcaacgttaaataccaccttaagtgaattctgtgacatctctctaa 320

                                                                       
Query: 121 acatgataaaattgagttaacagtatgtgaaccagttagacccctttctattctacacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatgataaaattgagttaacagtatgtgaaccagttagacccctttctattctacacag 380

                                                                       
Query: 181 catgtgttgagaatgagctgacgatgatccatggtcagaattcattgaaacaaaatgatt 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 catgtgttgagaatgagctgacggtgatccatggtcagaattcattgaaacaaaatgatt 440

                                                                       
Query: 241 agcattatattgaaatatttcaaagtcacccaaagtgagagttggttgacataacaaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcattatattgaaatatttcaaagtcacccaaagtgagagttggttgacataacaaaac 500

                                                                       
Query: 301 atggagactattgaattattttcatccattaaaaaaagtttgtctaaagtttggagctga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atggagactattgaattattttcatccattaaaaaaagtttgtctaaagtttggagctga 560

                                                                       
Query: 361 gacaaaaggatggaccatctagagactgccccacctgcgggtccgtcccacaatcagcca 420
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 561 gacaaaaggatggaccatctagagactgctccacctgcgggtccgtcccacaatcagcca 620

                                                                       
Query: 421 ccaaacgcatacactattgtatatgccagcaagattttgctgacaggaccctgatatagc 480
           ||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 621 ccaaatgcagacactattgtatatgccagcaagattttgctgaaaggaccctgatatagc 680

                                    
Query: 481 tgtctcttgtgaggctatgatgggg 505
           |||||||||||||||||||||||||
Sbjct: 681 tgtctcttgtgaggctatgatgggg 705


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)