Query= MSMg01no350_k03.b1 MSMg01no350_k03.b1 CHROMAT_FILE:
MSMg01no350_k03.b1 PHD_FILE: MSMg01no350_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:37 2005
(271 letters)
>mm_chr12_110968104_110968774
Length = 671
Score = 489 bits (253), Expect = e-143
Identities = 265/269 (98%), Gaps = 2/269 (0%)
Strand = Plus / Plus
Query: 4 ggaattcacctcttc-gcgtctaggaattcaatttgtcattggaagaatcttctggaagg 62
||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcacctct-cagagtctaggaattcaatttgtcattggaagaatcttctggaagg 262
Query: 63 agagaggacagtagacaagaggccccggttttcctgtcagagatctctgagaatatttga 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agagaggacagtagacaagaggccccggttttcctgtcagagatctctgagaatatttga 322
Query: 123 ggtcattcatgttctgtttgcttattgtgaacgagacacagttagcttccttttgactat 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggtcattcatgttctgtttgcttattgtgaacgagacacagttagcttccttttgactat 382
Query: 183 caaactctgcttttttgaagggctccctgcacaagcgatatgagactgcctgccttgtgt 242
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 383 caaactctgcttttttgaagggccccctgcacaagcgatatgagactgcctgccttgtgt 442
Query: 243 gagccttggatgagccctgcagctccttc 271
|||||||||||||||||||||||||||||
Sbjct: 443 gagccttggatgagccctgcagctccttc 471
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space: 173444
Effective search space used: 173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no350_k03.g1 MSMg01no350_k03.g1 CHROMAT_FILE:
MSMg01no350_k03.g1 PHD_FILE: MSMg01no350_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:37 2005
(468 letters)
>mm_chr12_111191781_111192648
Length = 868
Score = 890 bits (460), Expect = 0.0
Identities = 466/468 (99%)
Strand = Plus / Minus
Query: 1 ctccctgccttttgggagagattttcaggggtgcatctaaagtaacacagtccactgtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 ctccctgccttttgggagagattttcaggggtgcatctaaagtaacacagtccactgtca 609
Query: 61 ctcagggaagaggctcatgtgcacatatcccccacgcaagcagaattctcctatccctgc 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 cttagggaagaggctcatgtgcacatatcccccacgcaagcagaattctcctatccctgc 549
Query: 121 caaacccttcctgggtatgagtattccctcatctgtacacccacacctctgcccaggcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 caaacccttcctgggtatgagtattccctcatctgtacacccacacctctgcccaggcag 489
Query: 181 gagtagccatacgtgatgccaagaaggtagaggcaggtgacccaggtcaggcagcagtag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gagtagccatacgtgatgccaagaaggtagaggcaggtgacccaggtcaggcagcagtag 429
Query: 241 gccttatacagtctggggctcattgtctagagcagaggcataccaaataggatgggagag 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gccttagacagtctggggctcattgtctagagcagaggcataccaaataggatgggagag 369
Query: 301 ccacccaagtgtggtcctttcttgttacctatcaaggattagttttagagggttcccctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ccacccaagtgtggtcctttcttgttacctatcaaggattagttttagagggttcccctg 309
Query: 361 agagcaccatcctggcaggagatggctagtgtttgtgatggacttttgtagataccttcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 agagcaccatcctggcaggagatggctagtgtttgtgatggacttttgtagataccttcc 249
Query: 421 cttacttgaatgctctaggctactgagatttaaactactgaggcctag 468
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 cttacttgaatgctctaggctactgagatttaaactactgaggcctag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space: 392964
Effective search space used: 392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
