BAC Information

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BAC

Clone NameMSMg01-351P23
Chromosome12 (Build37)
Map Location 27,534,169 - 27,717,626
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC668726, Rnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
Downstream geneSox11, LOC100043009, LOC669327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351P23.T7 (MSMg01no351_p23.b1)MSMg01-351P23.TJ (MSMg01no351_p23.g1)
ACCAG463234AG463235
length743747
length of high quality
(start - end)		564 (56 - 619)456 (87 - 542)
definitionCHROMAT_FILE: MSMg01no351_p23.b1 PHD_FILE: MSMg01no351_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:22 2005CHROMAT_FILE: MSMg01no351_p23.g1 PHD_FILE: MSMg01no351_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,717,067 - 27,717,626)(27,534,169 - 27,534,624)
sequence
TGTTTTAANTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTCTGTCTATTCGCGGCTGCAACTACTGCTGCCTTT
GTAAAACCACATTGCTGGGCTTAGAGGTGAGCTTCTACTGATCCATGTGA
AACATTCTTCCCATGGTATCTAGAACATGGAGAGAGATGAAAGAAGGAAT
CAATGTCCTAAGGGAAAAGTAAAGTCACTTTTGTGACCCAGGGGACACTC
CATGTGAGAACAGGTGCCAGGAAGACTTAGTTTAGCTTTCAGGAACACCA
CCAAGGGCTACTTAGGTAAAAGAAGTCAGATATAAAAACTGACTAATGCA
GTCTTTGCTGCATCCATCAGTTTTCACAGTACACCTGACCTCTATTCAGA
CCCATGGCAGCTTCAAAGATGAAGGCAGTACCAAGAATAGTTTCTGTTAC
AGCCAAAAATCACATGGGTAGTCATTTATGAAAGTCCACCACTCCCAGTT
GGTCCCATTTGGCACTAATGCAATCCTAGGGGAAGCAGAAAAACTAAACA
GTATTATTAGCAATGACAGAAAGCTTTTAGCCTGGCTCCCCTGTACCATG
ATGGATGCTGTTTATCATATTTTACCTGTTGCTTTTAAACTTTCCTTGTC
AGAATGATTCATGGCTAAGGGGAAAGGTGACCAGATTATAGACAATGCGA
TTTGTCTAATCCGCAGTTGCCCTCGTCCAGAGACCGGGGACGA

CGCTGAANNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTGCAGACATCC
ACATTGAGTTTCTTTGGGGTCCACAAGGATTTGAGGACGAGTAACCCTCA
AAAGCATCAGTGTCAGGTAGAGCCTGTGAGGCATACAGCTCTATGGACTG
GACACTACTGGGTTCTGAACTTCTGCAGTGTACATGTAGTCATAGTTGCA
CTACACAGACATTATCATGTAAGCCACTGTAATAAATCCCCTTTTGATAT
GTATTCATTCTGTTGGGAAAAACCCTCACAATCCCCAAAGATACTTTTAA
ACTATGTTTTATACATTATTCCATGGTGCTGTTCACAATCTTCTTGGATC
AGTGTGTGGATTTCTCAGCATTGCCATTTTCTACTAGAATTGTGGATCAG
TGAGAGAAGTACCTCTGATGCAGGAGGTCATGCTTCCAGCATGGTGCAGG
GATGAAGTGATGCAGGGAGGGGGTAATGCAGATATGTGATGCAGAAACCG
ATGGAACTACCCTCGTGGGCTAGGGACCTTTGTTCTCGGAAACTAATGAA
GGGTGGGCATCAATCTCTTGCCTTCCTGGGAATGTCCTTTGGGAAGGGCC
GATGAGCCATGGATAATAATTACACCAGGACTCCTAAGTGGAGAGGTATT
CCTAAAACTGGGGGAAAATAAGGTATAATCTGGGTATCTGGGGCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_p23.b1 MSMg01no351_p23.b1 CHROMAT_FILE:
MSMg01no351_p23.b1 PHD_FILE: MSMg01no351_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:22 2005
         (564 letters)



>mm_chr12_27716863_27717826
          Length = 964

 Score = 1060 bits (548), Expect = 0.0
 Identities = 557/560 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgtctattcgcggctgcaactactgctgcctttgtaaaaccacattgctggg 64
           ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 gaattctctgtctaagggcggctgcaactactgctgcctttgtaaaaccacattgctggg 705

                                                                       
Query: 65  cttagaggtgagcttctactgatccatgtgaaacattcttcccatggtatctagaacatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 cttagaggtgagcttctactgatccatgtgaaacattcttcccatggtatctagaacatg 645

                                                                       
Query: 125 gagagagatgaaagaaggaatcaatgtcctaagggaaaagtaaagtcacttttgtgaccc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 gagagagatgaaagaaggaatcaatgtcctaagggaaaagtaaagtcacttttgtgaccc 585

                                                                       
Query: 185 aggggacactccatgtgagaacaggtgccaggaagacttagtttagctttcaggaacacc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 aggggacactccatgtgagaacaggtgccaggaagacttagtttagctttcaggaacacc 525

                                                                       
Query: 245 accaagggctacttaggtaaaagaagtcagatataaaaactgactaatgcagtctttgct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 accaagggctacttaggtaaaagaagtcagatataaaaactgactaatgcagtctttgct 465

                                                                       
Query: 305 gcatccatcagttttcacagtacacctgacctctattcagacccatggcagcttcaaaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gcatccatcagttttcacagtacacctgacctctattcagacccatggcagcttcaaaga 405

                                                                       
Query: 365 tgaaggcagtaccaagaatagtttctgttacagccaaaaatcacatgggtagtcatttat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tgaaggcagtaccaagaatagtttctgttacagccaaaaatcacatgggtagtcatttat 345

                                                                       
Query: 425 gaaagtccaccactcccagttggtcccatttggcactaatgcaatcctaggggaagcaga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gaaagtccaccactcccagttggtcccatttggcactaatgcaatcctaggggaagcaga 285

                                                                       
Query: 485 aaaactaaacagtattattagcaatgacagaaagcttttagcctggctcccctgtaccat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 aaaactaaacagtattattagcaatgacagaaagcttttagcctggctcccctgtaccat 225

                               
Query: 545 gatggatgctgtttatcata 564
           ||||||||||||||||||||
Sbjct: 224 gatggatgctgtttatcata 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no351_p23.g1 MSMg01no351_p23.g1 CHROMAT_FILE:
MSMg01no351_p23.g1 PHD_FILE: MSMg01no351_p23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:22 2005
         (456 letters)



>mm_chr12_27533969_27534824
          Length = 856

 Score =  882 bits (456), Expect = 0.0
 Identities = 456/456 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttgcagacatccacattgagtttctttggggtccacaaggatttgaggacgagtaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttgcagacatccacattgagtttctttggggtccacaaggatttgaggacgagtaacc 260

                                                                       
Query: 61  ctcaaaagcatcagtgtcaggtagagcctgtgaggcatacagctctatggactggacact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcaaaagcatcagtgtcaggtagagcctgtgaggcatacagctctatggactggacact 320

                                                                       
Query: 121 actgggttctgaacttctgcagtgtacatgtagtcatagttgcactacacagacattatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgggttctgaacttctgcagtgtacatgtagtcatagttgcactacacagacattatc 380

                                                                       
Query: 181 atgtaagccactgtaataaatccccttttgatatgtattcattctgttgggaaaaaccct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtaagccactgtaataaatccccttttgatatgtattcattctgttgggaaaaaccct 440

                                                                       
Query: 241 cacaatccccaaagatacttttaaactatgttttatacattattccatggtgctgttcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacaatccccaaagatacttttaaactatgttttatacattattccatggtgctgttcac 500

                                                                       
Query: 301 aatcttcttggatcagtgtgtggatttctcagcattgccattttctactagaattgtgga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatcttcttggatcagtgtgtggatttctcagcattgccattttctactagaattgtgga 560

                                                                       
Query: 361 tcagtgagagaagtacctctgatgcaggaggtcatgcttccagcatggtgcagggatgaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcagtgagagaagtacctctgatgcaggaggtcatgcttccagcatggtgcagggatgaa 620

                                               
Query: 421 gtgatgcagggagggggtaatgcagatatgtgatgc 456
           ||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgatgcagggagggggtaatgcagatatgtgatgc 656


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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