BAC Information

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BAC

Clone NameMSMg01-352C04
Chromosome12 (Build37)
Map Location 4,508,820 - 4,509,184
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC627245, Dtnb, LOC668197, Dnmt3a, LOC668289, Pomc1, C030014M07Rik, C330021A05Rik, Adcy3, Cenpo, 2410017P09Rik, Ncoa1, LOC100041995, LOC100042005
Downstream geneLOC100042014, Itsn2, 4930417G10Rik, A830093I24Rik, Pfn4, EG626534, 0610009D07Rik, Fkbp1b, BC068281, Gm1964, Ubxd4, Atad2b, LOC668332, Klhl29, 2810032G03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352C04.T7 (MSMg01no352_c04.b1)MSMg01-352C04.TJ (MSMg01no352_c04.g1)
ACCAG463338AG463339
length817754
length of high quality
(start - end)
229 (54 - 282)366 (92 - 457)
definitionCHROMAT_FILE: MSMg01no352_c04.b1 PHD_FILE: MSMg01no352_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:34 2005CHROMAT_FILE: MSMg01no352_c04.g1 PHD_FILE: MSMg01no352_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGCCCGCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCCCCTATGCGTGCACATTTTGATTGTCTACCATGGAC
CCCTCAAGATTAGGGAGTAAGTAAGAGGCTCTGAGCTCCAGAGAGCTACA
TTTGGTTCCCACTGTGGTCTGGAACATGGATCAGGCAAGCAGACATATTT
TGGAGCAGTAGCTGAGAATATACATCTATCTGATCTACAAGTGTGATTAG
AGGGGAGAGAAGAGAGAGGAGAGGAGAGGAGAGTTGTTCTCTTCGCCTTC
TCCCCTTCCTCTGTTCCCCGTTCTTTTTTTTTTTGCGCCCCCGCGCCGCC
GCCTTTTGTCGCCCTCTTGTTTTCTCTCTTCCCTCTCCCTTTTCGGCGGG
CCCTTCCCTTTCCCCTTGGTTCTGTTCTTTCCCCCCCTCCGCTTTCTTTC
TTCTTCCCCTGTCCTCCGTTCTTCCCCCTTTTCCCCTCGTTCCCTTCGTC
CCCCTGTTCGGTGTTGCGCGTTCCCCGTTGCCCCCNTCCCCGTCGTTCCC
ACCCTCTTCCCTCCCTTCTTCTCCCCTCGCCACTTTCGCCCCCTTCCTAT
CTGCTTCTCCCTTTTTTTTCCCTACTCCTTTGCCCCCCCTCGTTCTACCC
TTGATCGCATTACTGTTCTCCTTCTATATATCTTCTCTCCTTCTTTCCCG
CCGTCCGTCCTCCTCTCGCGTTGATTTGCCCACCCCCCTTTCTCCATCCC
CCCTTTTTTTTTTTCTTCCCTACCCCACCTCTCCTTCTTTTTCCCCTTCC
CTTTCCCTATTCCCTTG
NNGGGGATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTTAAGA
TAAGGGGACAAACGTGGGAGCTGGGCTCCCTGCAGTCGCTCTTTCTGCTT
CTTTCTTGCTTTGCAGCTGCCTCTCTTGCCCTGCCGCTTTATCTTCCCAC
TCACAGTAGCACCACCATCTGCAGGCAGACAGTTGGGTTATCAGCCAACA
GCGCATTTCCATAAAGTAGAGCAGCCCACAAAAGGCAGAATGATAAAAGA
TTTAAATCCAAGCAGTTTTTTTTTCCTCCTCTGAGCTATCTACTTTGGGG
TTCATATCTCAACCTCAGAAATCTTCAGGAAGCTGAGAGGCAGTATGGAA
AGAATAGTCTTCAGAGAGGAGACTTGACAATGGGGACAGATGCCTCAGAT
ATATTTGTCAGAGCAGGTTAAGAGCAATATATAATGCCCTAACTTCTTTG
AAGCAGAAATAAGATATAAAATTATGAAGTGGGTTTTCTTGGATAATGTT
ACCTTAAACCTCATTTCCAATGTCACTTCCAGATAAAATTCCCTGCTTCG
ATTAATACTTTTCCAATGGCCCCCTGCAAATACTAACCCCCCGGAATTCG
TTCAAAAACCCCCCCTTTATTTGTTACCCCGTTTTTACCCACTTAATTAA
GCCTCATTTTCACCAATCTTCTTTAACCACCCCTTGCAATTCCCCTTCCG
TCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_c04.g1 MSMg01no352_c04.g1 CHROMAT_FILE:
MSMg01no352_c04.g1 PHD_FILE: MSMg01no352_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:34 2005
         (366 letters)



>mm_chr12_4508620_4509384
          Length = 765

 Score =  677 bits (350), Expect = 0.0
 Identities = 362/366 (98%), Gaps = 1/366 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccttaagataaggggacaaacgtgggagctgggctccctgcagtcgctctttctgcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccttaagataaggggacaaacgtgggagctgggctccctgcagtcgctctttctgcttc 260

                                                                       
Query: 61  tttcttgctttgcagctgcctctcttgccctgccgctttatcttcccactcacagtagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcttgctttgcagctgcctctcttgccctgccgctttatcttcccactcacagtagca 320

                                                                       
Query: 121 ccaccatctgcaggcagacagttgggttatcagccaacagcgcatttccataaagtagag 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 ccaccatctgcaggcagacagttgggttatcagccaacagcacatttccataaagtagag 380

                                                                       
Query: 181 cagcccacaaaaggcagaatgataaaagatttaaatccaagcagtttttttttcctcctc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 cagcccacaaaaggcagaatgataaaagatttaaatccaagcagtttttttt-cctcctc 439

                                                                       
Query: 241 tgagctatctactttggggttcatatctcaacctcagaaatcttcaggaagctgagaggc 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 440 tgagctatctactttggggttcatatctgaacctcagaaatcttcaggaagctgagaggc 499

                                                                       
Query: 301 agtatggaaagaatagtcttcagagaggagacttgacaatggggacagatgcctcagata 360
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agtaaggaaagaatagtcttcagagaggagacttgacaatggggacagatgcctcagata 559

                 
Query: 361 tatttg 366
           ||||||
Sbjct: 560 tatttg 565


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 765
Length adjustment: 9
Effective length of query: 357
Effective length of database: 756
Effective search space:   269892
Effective search space used:   269892
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)