BAC Information

Click to search

BAC

Clone NameMSMg01-352C12
Chromosome12 (Build37)
Map Location 104,796,908 - 104,797,331
singlet/doubletsinglet
Overlap gene8430415E04Rik
Upstream geneChga, Itpk1, Moap1, D230037D09Rik, 5730410I19Rik, Btbd7, EG634678, Cox8c, 9030205A07Rik, LOC667269, Prima1, EG544888, Asb2, Otub2, Ddx24, D12Ertd647e, Ifi27, 1810023F06Rik
Downstream geneSerpina10, Serpina6, Gm46, Serpina1f, EG435316, Serpina1b, Serpina1d, LOC667951, LOC628801, Serpina1a, LOC667954, Serpina1c, Serpina1e, Serpina11, Serpina9, Serpina12, Serpina4-ps1, Serpina5, Serpina3a, Serpina3b, Serpina3c, LOC435318, LOC628883, Serpina3f, LOC667997, Serpina3g, Serpina3h, EG628900, EG238395, Serpina3k, EG628916, Serpina3m, Serpina3n, Gsc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352C12.T7 (MSMg01no352_c12.b1)MSMg01-352C12.TJ (MSMg01no352_c12.g1)
ACCAG463353AG463354
length776776
length of high quality
(start - end)
408 (51 - 458)424 (82 - 505)
definitionCHROMAT_FILE: MSMg01no352_c12.b1 PHD_FILE: MSMg01no352_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:35 2005CHROMAT_FILE: MSMg01no352_c12.g1 PHD_FILE: MSMg01no352_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCATATGTACCCAAGGATGGCCTTGAACTTTTGAACCTCCT
GCCTCTACCTCTAGAGTGCTGGAGATTGGACCCAAAGCTTTGTATAGGAT
AAGCAAGCACTACCAACTGAGCCACAACCCCAGTCCTGGGCTTGTTTTGT
TCTCCATCTGAAATAGGAAAGAACTGGCTTCTGCTATCTTCTTAAGGAAC
CATGGAGGGACTGGAGAAATGGCTAACTGGTGAGGACCATGTACACATCT
TACAGAGGACACGGGCTTCAGTTCCCAGTACCCACAGTGGCTCACAACTA
CCTGTAACTCCAGCTCCAGGAGATCTGATATCTGTGGGTAGTTATACATC
ACACACACACACACACACACAAACACCCATACACACACACACACACACAC
ACACACTCACACACACACACACACACACCTCCTCTCTTAAAAAATCATGA
AAATAAATTTAATAAAGAAACTACACACCTGACCCATGCTTGTAAGAAGG
GAGCTGAAAACTGGCACCAACTTTCTGCCCCCACCTATTTTTTACACCTT
TCTGCCACCTCTGCAAGCGAGCAAACAAAACCGGCGTCCACATTGACTAC
TTCCCGTACTTCCTCCACTTGCAAACTCCCAATATTTTCACAACCCTTAT
TCCCACCCCTGAATTTATTATTCCCGCGCTCACCTCCCTACCTTATTTTT
GCCGATACCAATACGCGCCTCCTTTN
NNCCCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACACAAAGACTGCTATCT
GCATTGCTCACAAAATATTTGCTTCAAAAAAAGAGTTCTTTGCACACAGG
TACAAATAAATAATAAATACTAGTCATTAAATATATAGCATGGATTATTA
ACAACCAATGGGCAGTATGAACTTAGAGAAGAAATGTAATAGTAGAGAAA
ACATTTATGATCACAGCAAGAAGCTAATTCTGAAAATATCTAGGAAGGAA
TAAATATAAATTAAAATTGTGATCAACCATAATACATTCCATATGATGAG
TCTTCAGAAGTCCCCACAGGCTGGTCATGCAGGATCTTGGTTAAATTATT
ATTGGTAATGTAGACATAAAATTACTGTACTAATTTTTGAAAAAAAATGA
AAATAATACCAAGTGATGTATCTATAATTTTATAAAGATAGTTACATCTT
AGGCTCTTAAGAATCTACCTTTAAAATGTCTTTCCTGAATATCACCAAGG
AACTCTTTTACACTAACTTTCCTAGATATTTTATCATAACTCCTACAAAC
ATTATAACTCCCTCTATTCTATTAACCAGGGGAAAAAATCTCCATTGCAA
TTCCCCGACCTTTTCTCTTCCTATTGTACAACCTCTTTTTTAAAGCTCGC
AAAAAATAACAATCAGAACTTCTTCTTCCTTCTCCCCCTCATTCTTGATT
CTCCGCATTCTATCCCCCTTCCTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_c12.g1 MSMg01no352_c12.g1 CHROMAT_FILE:
MSMg01no352_c12.g1 PHD_FILE: MSMg01no352_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:36 2005
         (424 letters)



>mm_chr12_104796708_104797531
          Length = 824

 Score =  783 bits (405), Expect = 0.0
 Identities = 420/425 (98%), Gaps = 2/425 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacacaaagactgctatctgcattgctcacaaaatatttgcttc-aaaaaaagagttctt 59
           |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 624 aacacaaagactgctatctgcattgctcacaaaatacttgcttcaaaaaaaagagttctt 565

                                                                       
Query: 60  tgcacacaggtacaaataaataataaatactagtcattaaatatatagcatggattatta 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgcacacaggtacaaataaataataaatactagtcattaaatatatagcatggattatta 505

                                                                       
Query: 120 acaaccaatgggcagtatgaacttagagaagaaatgtaatagtagagaaaacatttatga 179
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 504 acaaccaatgggcagtatgaacttagagaaaaaatgtaatagtagagaaaacatttatga 445

                                                                       
Query: 180 tcacagcaagaagctaattctgaaaatatctaggaaggaataaatataaattaaaattgt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcacagcaagaagctaattctgaaaatatctaggaaggaataaatataaattaaaattgt 385

                                                                       
Query: 240 gatcaaccataatacattccatatgatgagtcttcagaagtccccacaggctggtcatgc 299
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gatcaaccataatacactccatatgatgagtcttcagaagtccccacaggctggtcatgc 325

                                                                       
Query: 300 aggatcttggttaaattattattggtaatgtagacataaaattactgtactaatttttga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 324 aggatcttggttaaattattattggtaatgtagacataaaattactgtactaatttttg- 266

                                                                       
Query: 360 aaaaaaatgaaaataataccaagtgatgtatctataattttataaagatagttacatctt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaaaaatgaaaataataccaagtgatgtatctataattttataaagatagttacatctt 206

                
Query: 420 aggct 424
           |||||
Sbjct: 205 aggct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)