BAC Information

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BAC

Clone NameMSMg01-352J24
Chromosome12 (Build37)
Map Location 32,843,458 - 32,843,838
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22, Hbp1, Prkar2b
Downstream genePik3cg, 2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352J24.T7 (MSMg01no352_j24.b1)MSMg01-352J24.TJ (MSMg01no352_j24.g1)
ACCAG463705AG463706
length824774
length of high quality
(start - end)
---382 (74 - 455)
definitionCHROMAT_FILE: MSMg01no352_j24.b1 PHD_FILE: MSMg01no352_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:14 2005CHROMAT_FILE: MSMg01no352_j24.g1 PHD_FILE: MSMg01no352_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGGGGGGGNNNNNNNTNNTNTTTTNNNNCCGCTATACAACTCCTATTT
TCCAAGAATCCGCGNAAATCTGTCTCTTCTCCCCNNAATGATCGANATTG
TAAAGGATGCCACAACGATCGCTCAAATTCNNNAAAAGCCAGTGGGTTAA
CACGGNNGNCTTCCCAAAATGAAATCCTGGAAACCCGGGTCCAGGGAAAA
ACGGCCCAACGATCCAGGGGCGGGGGACCCGAAGCCCNNTNNNNNNTCCN
NNNNNNTNTNCCCCCNNNTTTCCCGCCCCCCCCNNNNNTNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNACACGCAGANNNNTNNNNNNNNNNNNNNNNN
NNNNNGGGAGGAGGGGCTTGGGGGGGGGGGGCCCAAGACACTCCCACCAG
AAAAAGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCCNNNNNNNNNNNCNCNCCCCNNNNNNCCNCCNNNNCCCNCNCCN
CCCCCCNNNNNNCCCCNCCNNNCNNCCNNCNCCCCCNNNNNNNCCCCCNN
NNNNNCCCCCCCCCCNNNNNNNNNCNCCCCCCCCTCCNNNNNNTNNNNNC
CCCCCCCCCCCCAACACACAGCCG
CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTGTCCTGAGGAATCCCCTTTTCTAT
TGTTCTACACAAAGCACTTTCTCCACTTCTCTGGCATAAATGTGCCAGAG
CTCACAAATGCTTCAAAAGATGCTAAGAGGAAGCTGAGCACATTTTTCTC
ATTAAACTTACTGGTAAAGAGAGAGCTTATATTAAATAACCTTGAGCAAC
ATAAACCTAATTATTGCTTCTGCAGAGACAGTGGAAGGGACGTGGCCTTG
ACCCTTTAATGAAGGGCCTAGGGCCCAGAAGCATCCCTGGGCTGCCTCAC
CGGCTTCTTGAGAGAATACACGTGCAAGCCCTGAAGAAAAGGTTTCCAGG
GAAACCATGTAACTTCTCTTTCCTGCCCCCTTCCCTGAATATTATTAAGC
ACTATACGTGCCTGTGTGAGCCTGGGGTTCTCATTTGGAATCAGAAGCTG
CTGGGGCGTGGTCGGCGGCCAACCTTCCTTTCCCCTCCTTCCCCTTTCCC
TTCACCTTTCCTTCTTTTTCCCCTTTTTCCTCTATCTTTTCCCCCCCTTC
TCTTTTTCTTATTTCTTTCCCTCCCCCCCTTTCTTCCCCTTTTTCCCCTT
TCCCCTTCTTTCCCCTCTTTCTACCGTTTCTTTTTTTCCCCCCTTCCCCC
TTTCTCCCTCTCCTTTCTTCCCCCCCCCCTATTTTTTTTCCCCTTCCCCT
TCCTTCCCTTTCTCTTCTCTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_j24.g1 MSMg01no352_j24.g1 CHROMAT_FILE:
MSMg01no352_j24.g1 PHD_FILE: MSMg01no352_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:14 2005
         (382 letters)



>mm_chr12_32843258_32844039
          Length = 782

 Score =  698 bits (361), Expect = 0.0
 Identities = 376/381 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgtcctgaggaatccccttttctattgttctacacaaagcactttctccacttctctg 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgtcctgaggaatccctttttctattgttctacacaaagcactttctccacttctctg 260

                                                                       
Query: 61  gcataaatgtgccagagctcacaaatgcttcaaaagatgctaagaggaagctgagcacat 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcataaatgtgtcagagctcacaaatgcttcaaaagatgctaagaggaagctgagcacat 320

                                                                       
Query: 121 ttttctcattaaacttactggtaaagagagagcttatattaaataaccttgagcaacata 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttctcattaaacctactggtaaagagagagcttatattaaataaccttgagcaacata 380

                                                                       
Query: 181 aacctaattattgcttctgcagagacagtggaagggacgtggccttgaccctttaatgaa 240
           |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacccaattatcgcttctgcagagacagtggaagggacgtggccttgaccctttaatgaa 440

                                                                       
Query: 241 gggcctagggcccagaagcatccctgggctgcctcaccggcttcttgagagaatacacgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggcctagggcccagaagcatccctgggctgcctcaccggcttcttgagagaatacacgt 500

                                                                       
Query: 301 gcaagccctgaagaaaaggtttccagggaaaccatgtaacttctctttcctgcccccttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaagccctgaagaaaaggtttccagggaaaccatgtaacttctctttcctgcccccttc 560

                                
Query: 361 cctgaatattattaagcacta 381
           |||||||||||||||||||||
Sbjct: 561 cctgaatattattaagcacta 581


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)