Query= MSMg01no354_d02.b1 MSMg01no354_d02.b1 CHROMAT_FILE:
MSMg01no354_d02.b1 PHD_FILE: MSMg01no354_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:16 2005
(583 letters)
>mm_chr12_3586887_3587869
Length = 983
Score = 924 bits (478), Expect = 0.0
Identities = 484/486 (99%)
Strand = Plus / Minus
Query: 5 gaattcttagtgttcattttctaaaattttattttcattttcagattcatcttaagaaac 64
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gaattcttagtggtaattttctaaaattttattttcattttcagattcatcttaagaaac 427
Query: 65 aacatacatcctgggtcatctagatagccaccaccctacaaatactgccaggcaatttca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aacatacatcctgggtcatctagatagccaccaccctacaaatactgccaggcaatttca 367
Query: 125 gcgcccacaactgcatgtaaaatgattagtggctggtgaatgacaggaagtacagtttct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gcgcccacaactgcatgtaaaatgattagtggctggtgaatgacaggaagtacagtttct 307
Query: 185 tgggcacatctgacctgtcatctgctttttgcaaatagagttttgaaacacagccatgtt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tgggcacatctgacctgtcatctgctttttgcaaatagagttttgaaacacagccatgtt 247
Query: 245 cagttctgtttcctttttcttcttaggagagggttgagggctagacatggtctcatgtag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 cagttctgtttcctttttcttcttaggagagggttgagggctagacatggtctcatgtag 187
Query: 305 tccaagctagcctcaaacttactaaacaactgaggaagaccttgaactcctaatcctctg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 tccaagctagcctcaaacttactaaacaactgaggaagaccttgaactcctaatcctctg 127
Query: 365 cctaagaggcaggattataggcctggcttcattcctgtattatcatttatggcagaattt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 cctaagaggcaggattataggcctggcttcattcctgtattatcatttatggcagaattt 67
Query: 425 ctacactcacaaaacaatggcagagtgtggtgtacgccacagagaacttctggcctgaaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 ctacactcacaaaacaatggcagagtgtggtgtacgccacagagaacttctggcctgaaa 7
Query: 485 agtctg 490
||||||
Sbjct: 6 agtctg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space: 557529
Effective search space used: 557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no354_d02.g1 MSMg01no354_d02.g1 CHROMAT_FILE:
MSMg01no354_d02.g1 PHD_FILE: MSMg01no354_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:16 2005
(457 letters)
>mm_chr12_3388976_3389832
Length = 857
Score = 748 bits (387), Expect = 0.0
Identities = 430/457 (94%), Gaps = 21/457 (4%)
Strand = Plus / Plus
Query: 1 aattccctcatggtaattcacaaccacctgtaatgggatccaatgcacactctactggtg 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 aattccctcatggtgattcacaaccacctgtaatgggatccaatgcacactctactggtg 281
Query: 61 tgtctgaagacagctacagcgtactcgtataactaaaaataaataaataagtaatttttt 120
|||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| |||||
Sbjct: 282 tgtctgaagacagctacagcatactcatataactaaaaataaataaataaataa-ttttt 340
Query: 121 ttttaaaagggagaaagaaaatgtcaggctagcatgcattccatcagttctctttcagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ttttaaaagggagaaagaaaatgtcaggctagcatgcattccatcagttctctttcagtt 400
Query: 181 tgaacacttgatgatacagagagagagagagagagggagagagagagagagagagagatt 240
||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 401 tgaacacttgatgatac--------------------agagagagagagagagagatatt 440
Query: 241 ggtgagtcccagtgagtgggagggactgagtcacggggaggacagtggctgcccttgaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtgagtcccagtgagtgggagggactgagtcacggggaggacagtggctgcccttgaga 500
Query: 301 tagcccatcctgacggagtcatagggctaggcagccattctgagttcagagcaggaagcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagcccatcctgacggagtcatagggctaggcagccattctgagttcagagcaggaagcc 560
Query: 361 caggctgggtgacgggcctgactgaactctgctgagtcacatttgtgcctgactgaactc 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 caggctgggtgacgggcctgactgaactctgctgagtcacacttgtgcctgactgaactc 620
Query: 421 cgctgagtcacacttgtgcatgtacagctctatgcca 457
|||||||||||||||||||||||||||||||||||||
Sbjct: 621 cgctgagtcacacttgtgcatgtacagctctatgcca 657
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space: 378609
Effective search space used: 378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
