BAC Information

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BAC

Clone NameMSMg01-354G07
Chromosome12 (Build37)
Map Location 31,230,310 - 31,414,895
singlet/doubletdoublet
Overlap geneTmem18
Upstream geneMyt1l, LOC100043496, Pxdn, Tpo, Sntg2
Downstream geneLOC100043055, Acp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354G07.T7 (MSMg01no354_g07.b1)MSMg01-354G07.TJ (MSMg01no354_g07.g1)
ACCAG465033AG465034
length739750
length of high quality
(start - end)		676 (52 - 727)536 (82 - 617)
definitionCHROMAT_FILE: MSMg01no354_g07.b1 PHD_FILE: MSMg01no354_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:32 2005CHROMAT_FILE: MSMg01no354_g07.g1 PHD_FILE: MSMg01no354_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,230,310 - 31,230,981)(31,414,360 - 31,414,895)
sequence
NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATGTATTTTGTACAGCAAATATTTCTCATTTTGATGAAG
TATAAGCTGTAGAACTTGGCTTTGGTATCTAGTCTTAGAAATGTTCACCT
AACACTGGCTACTGAATACTATCATGCTTTAATATATATATAATGTATAA
ATGCATGTATTACATGCATTTAATTACATTGTAATCATTTGTAATTTTAA
TAGATGGTAACAATTTTAATAAATTACAATAACTATATATAGAGAGATTA
CATGTAATAGCATGATCTAATTAAGCTAACTTATTTAAGAATCTCAAAAC
TCATGAAAAGGTTCATTTTGAAGCTCTGGATGTTCAGTTGCCCAGCACAA
ACACATTCACATATATTGATATTCAGCACAGAGTAGAACACGCTGGCTCT
TTATTACAAGGTCAAAGTTAAAATCCTGTAGAGAAGCACCAACTGTCCAT
GCTAACACAGAGAGCATTAGCAATGAGTGTGACGAACCTGGCTGTCAAAG
TCAACAACAGAGATGCTCCCCTGAGAGCGCCACCTGCAGCCAGTGATTGA
CAACAGCATGTACCTCTGGCTAGGTGTTTGCTTAGTGGAACTTGTGTGTG
AATAACATTTCAAGAGGACCACGTGTGCTTTGTTTGGATAATATTTTTAC
TGNTTCCCCATACTTTCAACTTTCCTAAACCAAATGGCT

NNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTATCACACCCAGCTTTTA
TTTTGGGAGCAAGGAAGTCTCAATCCTGTTTGTGGCAATACCTGGCACAG
GCCACCATCCTGATGTGTTCTCCCAGCCCTCATGAGAACATATCCTTTAG
AGGGATGTGGAGACCAACAATTGTCTTTCTAATTGCTTTGGGCATGTTCT
TTACTGTTTAGTGAAATGTGCACTTGTTTTCTATTTAGTTGTATAGGAAA
AAAAAAAGGGCTTCATTTCAATGCCTTCTGAATGAATATTTGAAAACTCA
CTCAGGCCCAGGAGTGTCTCCAAAATATGTCACAGCCCCTGCCAGAGCTG
CCAATGCAGCAATGAAGTCACCCAGTTTATGTCCTCAGAGAAAGGGTAAC
AGCGGTTTGTTTATAAACGACCCACTTAAACTGGGAAAGCTGTGTGGAGT
TATTTCCTCATGCAAATTACATGGGGTTCCAGCTGCACAGCTGTTCTGTG
ATGAGAGACTGGGGACGCTGGTCCTGTTGGAATGGCTCCAGGTGCCCAGT
GGTCTTGCGCAGCTTCAGATCCCCTGCAAACTCCAGGAGCCTACCTTTAT
GGAAACGAAAATAGGCGTCAGATGAAACATATACCGACTTGAATCATCCC
TTATTCTCGTCTAACAGAAGAATAGGAACCACTCCAAGGGAGGTGAAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_g07.b1 MSMg01no354_g07.b1 CHROMAT_FILE:
MSMg01no354_g07.b1 PHD_FILE: MSMg01no354_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:32 2005
         (676 letters)



>mm_chr12_31230106_31231181
          Length = 1076

 Score = 1294 bits (669), Expect = 0.0
 Identities = 671/672 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgtattttgtacagcaaatatttctcattttgatgaagtataagctgtagaac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgtattttgtacagcaaatatttctcattttgatgaagtataagctgtagaac 264

                                                                       
Query: 65  ttggctttggtatctagtcttagaaatgttcacctaacactggctactgaatactatcat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttggctttggtatctagtcttagaaatgttcacctaacactggctactgaatactatcat 324

                                                                       
Query: 125 gctttaatatatatataatgtataaatgcatgtattacatgcatttaattacattgtaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gctttaatatatatataatgtataaatgcatgtattacatgcatttaattacattgtaat 384

                                                                       
Query: 185 catttgtaattttaatagatggtaacaattttaataaattacaataactatatatagaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catttgtaattttaatagatggtaacaattttaataaattacaataactatatatagaga 444

                                                                       
Query: 245 gattacatgtaatagcatgatctaattaagctaacttatttaagaatctcaaaactcatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gattacatgtaatagcatgatctaattaagctaacttatttaagaatctcaaaactcatg 504

                                                                       
Query: 305 aaaaggttcattttgaagctctggatgttcagttgcccagcacaaacacattcacatata 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaaaggttcattttgaagctctggatgttcagttgcccagcacaaacacattcacatata 564

                                                                       
Query: 365 ttgatattcagcacagagtagaacacgctggctctttattacaaggtcaaagttaaaatc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttgatattcagcacagagtagaacacgctggctctttattacaaggtcaaagttaaaatc 624

                                                                       
Query: 425 ctgtagagaagcaccaactgtccatgctaacacagagagcattagcaatgagtgtgacga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctgtagagaagcaccaactgtccatgctaacacagagagcattagcaatgagtgtgacga 684

                                                                       
Query: 485 acctggctgtcaaagtcaacaacagagatgctcccctgagagcgccacctgcagccagtg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acctggctgtcaaagtcaacaacagagatgctcccctgagagcgccacctgcagccagtg 744

                                                                       
Query: 545 attgacaacagcatgtacctctggctaggtgtttgcttagtggaacttgtgtgtgaataa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 attgacaacagcatgtacctctggctaggtgtttgcttagtggaacttgtgtgtgaataa 804

                                                                       
Query: 605 catttcaagaggaccacgtgtgctttgtttggataatatttttactgnttccccatactt 664
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 805 catttcaagaggaccacgtgtgctttgtttggataatatttttactgtttccccatactt 864

                       
Query: 665 tcaactttccta 676
           ||||||||||||
Sbjct: 865 tcaactttccta 876


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space:   709956
Effective search space used:   709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no354_g07.g1 MSMg01no354_g07.g1 CHROMAT_FILE:
MSMg01no354_g07.g1 PHD_FILE: MSMg01no354_g07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:32 2005
         (536 letters)



>mm_chr12_31414160_31415095
          Length = 936

 Score = 1029 bits (532), Expect = 0.0
 Identities = 535/536 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatcacacccagcttttattttgggagcaaggaagtctcaatcctgtttgtggcaatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ctatcacacccagcttttattttgggagcaaggaagtctcaatcctgtttgtggcaatac 677

                                                                       
Query: 61  ctggcacaggccaccatcctgatgtgttctcccagccctcatgagaacatatcctttaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ctggcacaggccaccatcctgatgtgttctcccagccctcatgagaacatatcctttaga 617

                                                                       
Query: 121 gggatgtggagaccaacaattgtctttctaattgctttgggcatgttctttactgtttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gggatgtggagaccaacaattgtctttctaattgctttgggcatgttctttactgtttag 557

                                                                       
Query: 181 tgaaatgtgcacttgttttctatttagttgtataggaaaaaaaaaagggcttcatttcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tgaaatgtgcacttgttttctatttagttgtataggaaaaaaaaaagggcttcatttcaa 497

                                                                       
Query: 241 tgccttctgaatgaatatttgaaaactcactcaggcccaggagtgtctccaaaatatgtc 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tgccatctgaatgaatatttgaaaactcactcaggcccaggagtgtctccaaaatatgtc 437

                                                                       
Query: 301 acagcccctgccagagctgccaatgcagcaatgaagtcacccagtttatgtcctcagaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 acagcccctgccagagctgccaatgcagcaatgaagtcacccagtttatgtcctcagaga 377

                                                                       
Query: 361 aagggtaacagcggtttgtttataaacgacccacttaaactgggaaagctgtgtggagtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 aagggtaacagcggtttgtttataaacgacccacttaaactgggaaagctgtgtggagtt 317

                                                                       
Query: 421 atttcctcatgcaaattacatggggttccagctgcacagctgttctgtgatgagagactg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 atttcctcatgcaaattacatggggttccagctgcacagctgttctgtgatgagagactg 257

                                                                   
Query: 481 gggacgctggtcctgttggaatggctccaggtgcccagtggtcttgcgcagcttca 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gggacgctggtcctgttggaatggctccaggtgcccagtggtcttgcgcagcttca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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