BAC Information

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BAC

Clone NameMSMg01-354L14
Chromosome12 (Build37)
Map Location 32,720,725 - 32,721,256
singlet/doubletsinglet
Overlap genePrkar2b
Upstream gene9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22, Hbp1
Downstream genePik3cg, 2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354L14.T7 (MSMg01no354_l14.b1)MSMg01-354L14.TJ (MSMg01no354_l14.g1)
ACCAG465283AG465284
length716728
length of high quality
(start - end)		559 (57 - 615)533 (87 - 619)
definitionCHROMAT_FILE: MSMg01no354_l14.b1 PHD_FILE: MSMg01no354_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:57 2005CHROMAT_FILE: MSMg01no354_l14.g1 PHD_FILE: MSMg01no354_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACCAACANCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTCACTTGACGAATACCGAATGGCAGAGAAGCACC
TGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACA
ACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTC
AGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCC
ATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGG
CGGTTCCTCAGAAAATTGGACATAGTACTATCGGAGGATCCAGCAATACC
TCTCCTGGGCATATATCCAGAAGATGTCCCAACTGGTAAGAAGGACACAT
GCTCCACTATGTTCATAGCAGCATTATTTATAATAGCCAGAAGCTGGAAA
GAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACAT
CTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAAT
TCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACA
CATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTA
GCCCCAAACCTAGGATACCCAAGATATAAGATACTATTTCCTAAACACAT
GCAACTTATGAATAAG

TTTCCCCCCCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGATTAGCAATGTG
GACTACAACTGGCCCTTTTACTTACAGAACCAGTAACTGACAGGTCCCTG
GGCAAATGCTGAAAATACACAACACTGTCACAAGAAGTCATCAGAAATGG
AGCTACTAAAAAAATATAAAAACAGGGGCTGGAGGGACGGCTCAGTAGGA
AAGAGCACTGGCTCCTCTTCTAGAGGATCAGAGTTCCATTCCCAGCCCCA
CCTCGGGGCTCACAACCTTCTTTAACTACAGTTCCAGGGCTCTGAAGTCC
TCTGAGGGCACCTCACACACGACATGCATTCCCCCAGACATACACATATG
CATCAATATAAATAAAAGTGAATATAGAAAAAGGAGCATGAACCTAAATA
ATGTGTATGCTAAGTATTTTAATAAAGATACTTCTCACCCTCATGAATCA
TAGCAACAAAGTATAAAAGGAACCTTTTATTTAAATTATCAAAATCTGAA
AATTACTTTTAATAGATGCGATATAAATACTAAAAGCTCCAAACTCTAAG
CTTTGAGGAGCTCGGAAATGAGAAACGCTGCATCTCACTACGTCTTCATC
TAGNCAGCTGAGACCAAGNCAGACCCATAGATCAAGCAAGTCGCACACTT
TTGATGTCGCAATGTTTCTATCCTATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_l14.g1 MSMg01no354_l14.g1 CHROMAT_FILE:
MSMg01no354_l14.g1 PHD_FILE: MSMg01no354_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:57 2005
         (533 letters)



>mm_chr12_32720525_32721457
          Length = 933

 Score =  992 bits (513), Expect = 0.0
 Identities = 528/533 (99%), Gaps = 1/533 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgattagcaatgtggactacaactggcccttttacttacagaaccagtaactgacaggtc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 tgattagcaatgtggactacaactggcccttttacttacagaaccagtaagtgacaggtc 260

                                                                       
Query: 61  cctgggcaaatgctgaaaatacacaacactgtcacaagaagtcatcagaaatggagctac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgggcaaatgctgaaaatacacaacactgtcacaagaagtcatcagaaatggagctac 320

                                                                       
Query: 121 taaaaaaatataaaaacaggggctggagggacggctcagtaggaaagagcactggctcct 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaaaaaatataaaaacaggg-ctggagggacggctcagtaggaaagagcactggctcct 379

                                                                       
Query: 181 cttctagaggatcagagttccattcccagccccacctcggggctcacaaccttctttaac 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cttctagaggatcagagttcaattcccagccccacctcggggctcacaaccttctttaac 439

                                                                       
Query: 241 tacagttccagggctctgaagtcctctgagggcacctcacacacgacatgcattccccca 300
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 440 tacagttccagggctctgaagtcctctgagggcacctcacacacggcatgcattccccca 499

                                                                       
Query: 301 gacatacacatatgcatcaatataaataaaagtgaatatagaaaaaggagcatgaaccta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gacatacacatatgcatcaatataaataaaagtgaatatagaaaaaggagcatgaaccta 559

                                                                       
Query: 361 aataatgtgtatgctaagtattttaataaagatacttctcaccctcatgaatcatagcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aataatgtgtatgctaagtattttaataaagatacttctcaccctcatgaatcatagcaa 619

                                                                       
Query: 421 caaagtataaaaggaaccttttatttaaattatcaaaatctgaaaattacttttaataga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 caaagtataaaaggaaccttttatttaaattatcaaaatctgaaaattacttttaataga 679

                                                                
Query: 481 tgcgatataaatactaaaagctccaaactctaagctttgaggagctcggaaat 533
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 680 tgcgatataaatactaaaagctccaaactctaagctttgaggagcttggaaat 732


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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