BAC Information

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BAC

Clone NameMSMg01-355C02
Chromosome12 (Build37)
Map Location 96,875,217 - 96,875,806
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC217786, LOC100039603
Downstream geneLOC667688, Flrt2, 1700019M22Rik, LOC100039664
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355C02.T7 (MSMg01no355_c02.b1)MSMg01-355C02.TJ (MSMg01no355_c02.g1)
ACCAG465592AG465593
length761757
length of high quality
(start - end)
594 (45 - 638)485 (73 - 557)
definitionCHROMAT_FILE: MSMg01no355_c02.b1 PHD_FILE: MSMg01no355_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:30 2005CHROMAT_FILE: MSMg01no355_c02.g1 PHD_FILE: MSMg01no355_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTCAAACTCTTGAGATTAGCTAGGTATGAATTTATGCAAATTTCT
ACACCTAAAATCTGATTCAGACCATACATTTCTCTCTCATCATAACCTAA
ATGCTTTGATGTATGGAAATATATCTGTGTTTTATTAGGGCCATGTGCCC
TTTGAAATGTGAGAAACAAAAATATTATGGAAAGGACAGTTATGTCTTTT
TTATTAGATTAAGGAAGGCACTTAAATTCACTAGTCACTTGGAAATAATT
TAGAAAGAGCTCACCACCACAAATACTGGATTATCAAGGACGAATTCATT
TTAAGTTGCACTGTTTTTTAATGAATAAATCATATTTAGTTGGAAGATAA
AAATTAAAATGACACTTGAGATTGAAAAGAAAACCATGGAAACATATTAG
ATTTGGCCATTTATATGGAAAGGCTTATAGGCAATTTATATATAAAGCAA
ACTAAAAGGCATTTCTATTCATGTTGCTTAAGTGTTTTGGAATGAACTCA
TGAAACATTGAGAGTAATATCATGGTTACAAGAAGACAGAGATAGGCAAA
GACTGGAGAGTTGCTAGCCAAAGTTTATAAAATTTCTTCACATGGGATAA
CATTTTAAGACTAATTTTCTATCAGGATTGTATAGAGAATATATCATACT
CAATAAGTAGACATTCTTAATGTATTAAAGTATTTTACATTAATTAATAA
TTTAATGGGCG
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCAGAGA
AGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCA
GTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCAGAGGATCCAGC
AATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGG
ACACATGCTCCACAATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGC
TGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTG
GTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTA
TGAAATTCCTAGCCCAATGGATGGACTTGGAGGGGATCATCCTGAGTGAG
GTAACACATTTCCAAAGGAACTCCCACAATAAGTACTCCCTGATAAGTGG
AAATTAACCCCAAACTTAGAAACCTCGGATAAAGATTCAATTTCCTTAAC
CCATGAAATTCTCGAAAATTGGAGACTGATGGGGGTCACTTAGTCCCTTC
TTTAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_c02.b1 MSMg01no355_c02.b1 CHROMAT_FILE:
MSMg01no355_c02.b1 PHD_FILE: MSMg01no355_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:30 2005
         (594 letters)



>mm_chr12_96875013_96876006
          Length = 994

 Score = 1118 bits (578), Expect = 0.0
 Identities = 587/590 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttcaaactcttgagattagctaggtatgaatttatgcaaatttctacacctaa 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttcaaactcatgagattagctaggtatgaatttatgcaaatttctacacctaa 264

                                                                       
Query: 65  aatctgattcagaccatacatttctctctcatcataacctaaatgctttgatgtatggaa 124
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatctgaatcagaccatacatttctctctcatcataacctaaatgctttgatgtatggaa 324

                                                                       
Query: 125 atatatctgtgttttattagggccatgtgccctttgaaatgtgagaaacaaaaatattat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atatatctgtgttttattagggccatgtgccctttgaaatgtgagaaacaaaaatattat 384

                                                                       
Query: 185 ggaaaggacagttatgtcttttttattagattaaggaaggcacttaaattcactagtcac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggaaaggacagttatgtcttttttattagattaaggaaggcacttaaattcactagtcac 444

                                                                       
Query: 245 ttggaaataatttagaaagagctcaccaccacaaatactggattatcaaggacgaattca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttggaaataatttagaaagagctcaccaccacaaatactggattatcaaggacgaattca 504

                                                                       
Query: 305 ttttaagttgcactgttttttaatgaataaatcatatttagttggaagataaaaattaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttttaagttgcactgttttttaatgaataaatcatatttagttggaagataaaaattaaa 564

                                                                       
Query: 365 atgacacttgagattgaaaagaaaaccatggaaacatattagatttggccatttatatgg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atgacacttgagattgaaaagaaaaccatggaaacatattagatttggccatttatatgg 624

                                                                       
Query: 425 aaaggcttataggcaatttatatataaagcaaactaaaaggcatttctattcatgttgct 484
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaagacttataggcaatttatatataaagcaaactaaaaggcatttctattcatgttgct 684

                                                                       
Query: 485 taagtgttttggaatgaactcatgaaacattgagagtaatatcatggttacaagaagaca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 taagtgttttggaatgaactcatgaaacattgagagtaatatcatggttacaagaagaca 744

                                                             
Query: 545 gagataggcaaagactggagagttgctagccaaagtttataaaatttctt 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gagataggcaaagactggagagttgctagccaaagtttataaaatttctt 794


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)