BAC Information

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BAC

Clone NameMSMg01-355O04
Chromosome12 (Build37)
Map Location 33,599,361 - 33,599,701
singlet/doubletsinglet
Overlap genenone
Upstream geneHbp1, Prkar2b, Pik3cg, 2010109K11Rik, LOC100043548, Pbef1, LOC100043553
Downstream gene4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4, Atxn7l1, 4930504H06Rik, Twistnb, LOC668801, LOC668806
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355O04.T7 (MSMg01no355_o04.b1)MSMg01-355O04.TJ (MSMg01no355_o04.g1)
ACCAG466165AG466166
length858786
length of high quality
(start - end)
153 (38 - 190)338 (72 - 409)
definitionCHROMAT_FILE: MSMg01no355_o04.b1 PHD_FILE: MSMg01no355_o04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:27 2005CHROMAT_FILE: MSMg01no355_o04.g1 PHD_FILE: MSMg01no355_o04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCCGCGGAAT
TCTAATAGGTCTCCCTTTATGTGTTACTTGGCCTTTATCCCTTGTGGCTT
TTAATATTCTTTTTTGTTTTGTTTTGTTTTGTACACTTAGTGTTTTGATT
ATGATGTGGTGGGAGGAGTTTCTTTCATTCACTCTATTTTATGTTACTGA
TGCTTCTTACATTTTTATACGCATGTCATTCCTTATGCCAGGTAACTTTT
CTTCTATAATTTTGTGTAAGACCTCTTCTGCCCCTCTGATTTCCCCTTTT
CCTCCCTTCCCATCATTCCTTTCTTTTACTCTTTTCCCACCGCTCCACAT
CTCCCTTATGCTCTCGTCGCTATAACCCTTTTTACCTCTTCCTCCTTCTT
TGTTTCTGACCCTTCCTCCCTTGTTCCCATTCCCTCCCCACTATTTTTCT
CTCTTTCCTCTTTTTTTTCTTTTATTCTCCACTTCTTATCCTTTCTCCTT
TTTTTCCCTCCTTTTTTTTCTTCCTCTCTTTCTTTTTTTCTCTTCTCCTC
CGCCTCTTCCCTCTTCTTTTACTCACTCATTTATTCTCCCTTCCTCCCCC
CCTTTTTCCTCTATTATCTCTTTCTCCCTTTTCATTTTTCTCTTCTTTTT
TTTTTGTCTCTATATTTTGTTCTTTTCTCTCACCTTTTTTTTCCCCCTTT
TTCATTCTTCTTTCCCCGTATACTACTTTCCTCTTTAACTTTTTNCCTCC
TTTTCTCTTTCTCTCCTTCTCCTTTTTTATTCCTCCCTTCCCTCTCTCTA
TATTACCTCATTCTATTTCTATTTTTTTCTTTTCCTTTTTTATATCCCTT
CTCCCCCG
TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGAGCAAAGAGAGCCCTTCCAGTGTCAAA
GAACAGTTGGAGTTTTAATAGAGCACTCTCTATTTTTAAATGCTGGCAGC
TTTTAAAGCATTTTTTTTTGTCAGTGCAGGCAAAATATAATATGTCTGCA
GGCTGGTTCCAGCCCACAGTCTGCTGGTTTGCAACCCCTGTTCTCAGCCT
CACCAAGGAACACCCTTGTGAGTCGGCTGACTTAGGTCTGACAGTAACAA
AACTTGCTGATAGAGTGGTGAGACGCTGACATGCATATTCAGAGGTGGTT
GTGGAAATGGTCTGAACACTACAGCTAAGTGCAGTGCTCCTAAGTCAGGC
TGATGTGCGGTACTGTTGGGAGGCAGAGGACGGGCCACATCCTTTGTGAG
CTTTTTCAGTCTGGTCTTCTCCCATACCTTGTGGTTTGTCTTCTCTGCTT
TTCTTTCTCATCTTTCCTTTCATCTTTCTCCCTTTTCATTGTCTGCGTCT
CTGACAATCCTGTGAACTCCAACGCCTCCTGCATGCTAACCAAGTGCTCC
CTTCATTAAACTGCCACTTCTATTCTCTTCTGTCGCTTTCGTACACTACG
ACCTCATTCACTTATAACTTAATTTTTTTTCCCCTACTCAATCTTCTTTT
AATTACATTTTTTACTTTACAATTCTCTCCATAAATGCGCATTTCCTCTT
CTTCTACTCCCTACTACTTTTTCGTTCTTTATTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_o04.g1 MSMg01no355_o04.g1 CHROMAT_FILE:
MSMg01no355_o04.g1 PHD_FILE: MSMg01no355_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:27 2005
         (338 letters)



>mm_chr12_33598992_33599729
          Length = 738

 Score =  644 bits (333), Expect = 0.0
 Identities = 338/341 (99%), Gaps = 3/341 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgagcaaagagagcccttccagtgtcaaagaacagttggagttttaatagagcactctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 tgagcaaagagagcccttccagtgtcaaagaacagttggagttttaatagagcactctct 651

                                                                       
Query: 61  atttttaaatgctggcagcttttaaagca---tttttttttgtcagtgcaggcaaaatat 117
           |||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||
Sbjct: 650 atttttaaatgctggcagcttttaaagcattttttttttttgtcagtgcaggcaaaatat 591

                                                                       
Query: 118 aatatgtctgcaggctggttccagcccacagtctgctggtttgcaacccctgttctcagc 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 aatatgtctgcaggctggttccagcccacagtctgctggtttgcaacccctgttctcagc 531

                                                                       
Query: 178 ctcaccaaggaacacccttgtgagtcggctgacttaggtctgacagtaacaaaacttgct 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ctcaccaaggaacacccttgtgagtcggctgacttaggtctgacagtaacaaaacttgct 471

                                                                       
Query: 238 gatagagtggtgagacgctgacatgcatattcagaggtggttgtggaaatggtctgaaca 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gatagagtggtgagacgctgacatgcatattcagaggtggttgtggaaatggtctgaaca 411

                                                    
Query: 298 ctacagctaagtgcagtgctcctaagtcaggctgatgtgcg 338
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ctacagctaagtgcagtgctcctaagtcaggctgatgtgcg 370


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)