BAC Information

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BAC

Clone NameMSMg01-355P11
Chromosome12 (Build37)
Map Location 85,438,323 - 85,438,673
singlet/doubletsinglet
Overlap genenone
Upstream geneDpf3, Wdr21, Zfyve1, LOC626950, Rbm25, Psen1, Papln, Numb, LOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963
Downstream geneAcot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2, 1110018G07Rik, Fcf1, Ylpm1, Prox2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355P11.T7 (MSMg01no355_p11.b1)MSMg01-355P11.TJ (MSMg01no355_p11.g1)
ACCAG466224AG466225
length788760
length of high quality
(start - end)
357 (46 - 402)419 (75 - 493)
definitionCHROMAT_FILE: MSMg01no355_p11.b1 PHD_FILE: MSMg01no355_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:33 2005CHROMAT_FILE: MSMg01no355_p11.g1 PHD_FILE: MSMg01no355_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGATATCAAATGTGAACAAGTGAATGAGGATATTTTTCTAAAT
TGTCTTTGGTCACCGGATTCTGTGTGGTTACTGTTGAGTCTGTGGCTCTG
TTTGCTTGCTGTGTTTTTATTTTTTTCAGACTCATGCTTTTATACCTATA
AGCAAAGGACTAAATTTTCAGTTCTTGGTTTTGCATGCAGTGAGATTCCC
CACCCCTATATATATGGAAACAGTAAAGATAAAGATAGAGGTGACCTAGC
AAAGCTCTGAATCCTCTGCACCCAGAAATGTAGTATGTTTTAAACAAGCC
TGGGTCTTGGTGTATCACATCTGTTGGAGCCAAAAACCTCCGAGGTTCCA
GGAGATCAAAGAAAACAGCAGATTCTGGGATTGATGAAGTTGCAATTTAT
TGACCAAGTGTGTCTTGAGCAACAAAATACACAGGTGGGTCGTGGTTATA
AGAGTGAGTACCCTAAAACCATCTATCAAATTTTTGTATGTCTCGGTACT
TTTGGCAATTTCTGGTATCTGTTGTTGGAGCCCAAGCGATTCCTGGCTCC
TTTGTAATAACTGTTCTCCTTCTTTCACCCCTTATCCTTTCTCCCCGTAT
CTCCTATTTGATTTGCAACTTTTAATCTCCCGTCTTGCTCCCCCTATATT
TTTCCCCCCCTCCTTTTTTACTCCTTCTTCCTTCTCTTCTTTATTCCCCC
TCATCCCTAATTATCCCTATCTCTCTCTTATTTTTTCN
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGCACCATCCAGGTGGTGCTGATTTT
GGAGGCATACTTGTGCCAAGGTTCCAGAAAAAAACTAATGAGGCTCAGCA
ATGTGAACGGAGAGGCCCTGAGAAAGAGATGTGTGAGGAAGAGGCCTAAG
TTGCAACGGAAACCCACGCTGGCGATACCAGGAACACTAACTAGTCTGTT
GAAAAAGCTCCAGGTACTGAGAAGAGACAGCCCTAGAGAACGGCCACGTG
TGCTACTAGTGACAGCTACTAAGGGCTGAGCCCCAGTCCACTTAAGTATG
CAATACCATCACAAAACCCAGAAGCCAGATATGGGGAGGTTCAGGATTCC
CTGCTGAGGTTTACTCTTGTTTCAGCTAATTTCTACTTGCTAACCTCATT
CCTTAACTGTGCAATGGAAGTAGGCAACCTATTTTTATTTTATAGTTGCC
CATAGCTGAGGTCAGAATAGACTTTGGGCTTTGAACTTTAGTATCTGTTG
GTACTGTTACTATTTTGTGGACTCTGCAAGTCGATCCACATGTATTTCAC
CCCGTGAGTAATACACCTGACCTTATGAGGGACACTACCAACCCACCCCA
ATATTACCGTTTGGATGTAAAAGGCCTCCTTAAAGCTCTGGTGGTTTCAC
ACTTTGCCTTCTTTTTTTTATCTACTTTTGGCTAAATCGTGGTACTCTTC
TTCCTATACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_p11.b1 MSMg01no355_p11.b1 CHROMAT_FILE:
MSMg01no355_p11.b1 PHD_FILE: MSMg01no355_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:33 2005
         (357 letters)



>mm_chr12_85438119_85438874
          Length = 756

 Score =  673 bits (348), Expect = 0.0
 Identities = 351/352 (99%), Gaps = 1/352 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgatatcaaatgtgaacaagtgaatgaggatatttttctaaattgtctttgg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gaattctctgatatcaaatgtgaacaagtgaatgaggatatttttctaaattgtctttgg 496

                                                                       
Query: 65  tcaccggattctgtgtggttactgttgagtctgtggctctgtttgcttgctgtgttttta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tcaccggattctgtgtggttactgttgagtctgtggctctgtttgcttgctgtgttttta 436

                                                                       
Query: 125 tttttttcagactcatgcttttatacctataagcaaaggactaaattttcagttcttggt 184
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 -ttttttcagactcatgcttttatacctataagcaaaggactaaattttcagttcttggt 377

                                                                       
Query: 185 tttgcatgcagtgagattccccacccctatatatatggaaacagtaaagataaagataga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tttgcatgcagtgagattccccacccctatatatatggaaacagtaaagataaagataga 317

                                                                       
Query: 245 ggtgacctagcaaagctctgaatcctctgcacccagaaatgtagtatgttttaaacaagc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ggtgacctagcaaagctctgaatcctctgcacccagaaatgtagtatgttttaaacaagc 257

                                                               
Query: 305 ctgggtcttggtgtatcacatctgttggagccaaaaacctccgaggttccag 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ctgggtcttggtgtatcacatctgttggagccaaaaacctccgaggttccag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 756
Length adjustment: 9
Effective length of query: 348
Effective length of database: 747
Effective search space:   259956
Effective search space used:   259956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)