Query= MSMg01no357_a04.b1 MSMg01no357_a04.b1 CHROMAT_FILE:
MSMg01no357_a04.b1 PHD_FILE: MSMg01no357_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:54 2005
(501 letters)
>mm_chr12_7269612_7270512
Length = 901
Score = 774 bits (400), Expect = 0.0
Identities = 449/482 (93%), Gaps = 28/482 (5%)
Strand = Plus / Minus
Query: 20 ctctctctctctctctctctctctctctctctctctctccttccttctttcttttccctc 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 ctctctctctctctctctctctctctctctctctctctccttccttctttcttttccctc 827
Query: 80 cctcctcctcctttctttccttctttctctctttctttctttctttctttctttctttct 139
||||||||||||||||||||||||||||||| || |||
Sbjct: 826 cctcctcctcctttctttccttctttctctc----------------------tc--tct 791
Query: 140 ttctttctttctttctttctttctttgcttccttccttccttctttcccccttcctccct 199
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 790 ctctttatttctttctttctttc----cttccttccttccttctttcccccttcctccct 735
Query: 200 cccttcttttctttcctttctttctttttcttcagaggttttatgaaacagaaatggcaa 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 cccttcttttctttcctttctttctttttcttcagaggttttatgaaacagaaatggcaa 675
Query: 260 tgctcacagaaagaatgttcatatacacagtaacatcatgcgtcacttagcagctgtagc 319
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 674 tgctcacagaaagaatgttcatatacacagtaacatcgtgtgtcacttagcagctgtagc 615
Query: 320 ccccatgaaacagtagaaggacagtgagctgattttgtcctgtgcttgtcgcacagagat 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ccccatgaaacagtagaaggacagtgagctgattttgtcctgtgcttgtcgcacagagat 555
Query: 380 atcaccactacagccatgagaaactgccagacctcagtttcatgccaggcccactccagc 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 atcaccactacagccatgagaaactgccagacctcagtttcatgccaggcccactccagc 495
Query: 440 tcaaaagctagttttgtatactatgtctggatagacaaaaggtacctttttttttttttt 499
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 494 tcaaaagctagttttgtatactatgtctgaatagacaaaaggtacctttttttttttttt 435
Query: 500 tt 501
||
Sbjct: 434 tt 433
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no357_a04.g1 MSMg01no357_a04.g1 CHROMAT_FILE:
MSMg01no357_a04.g1 PHD_FILE: MSMg01no357_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:54 2005
(448 letters)
>mm_chr12_7058935_7059782
Length = 848
Score = 826 bits (427), Expect = 0.0
Identities = 442/447 (98%)
Strand = Plus / Plus
Query: 1 tatgtcaactaatattgtctctctctctcttgactttctagccaaacccatctctatgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgtcaactaatattgtctctctctctcttgactttctagccaaacccatctctatgat 260
Query: 61 ggaagcttcatactggaagcttgacgatgtccagttttctctggtaataatgcatgtgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaagcttcatactggaagcttgacgatgtccagttttctctggtaataatgcatgtgtg 320
Query: 121 tattcatttagtgatattgattgtcccatgtgcattttgatctccagttatagaaatttt 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 tatttatttagtgatattgattgtcccatgtgcattttgatctccagttatagaactttt 380
Query: 181 cttgcccatttatttcagctcctcaaaggcaggacaagtgtcctcataacctgttaatca 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 cttgcccatttatttcagctcctcaaaggcagaacaagtgtcctcataacctgttaatca 440
Query: 241 gctaaacccatggaatctagtttcaaacaagtatgagactgagatcagtagatgcacccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctaaacccatggaatctagtttcaaacaagtatgagactgagatcagtagatgcacccc 500
Query: 301 cttggactgtgttcttatatgcagtaaattacatgcccaacagctttgcatgctgttaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttggactgtgttcttatatgcagtaaattacatgcccaacagctttgcatgctgttaca 560
Query: 361 ttagcaaaacagataaaggttttaagtcccacaatagttaatcaatagatgttggagcaa 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 ttagcaaaacagataaaggttttaagtcccacaatagttaatcaatagatgttgcagcaa 620
Query: 421 agaatccatagattttgaatgagtttg 447
||||||||||||||||||||||||||
Sbjct: 621 ggaatccatagattttgaatgagtttg 647
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space: 367044
Effective search space used: 367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
