ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTCCCTCANCCCACTTGTTTGTTTAGTTTATATTACTAGGTTTCTGC
TTATCTGGACAATGGAAAACTGTCCAGTGGTGTCTGTGTTTGCTTACACA
AATAAATATTGGATTAATTAGAACATGTTCTTAGAGAAGGACACCAAATT
CTTCCTTAAACATCATCAACGTAAGTAGGATGACCCATTGTTGTTTCATG
GAGGTATTACTTCACTATAATTATGTCATAAATAAGGATAGTGACAGAAG
CATTGATATGAATAGTGTCTGTCTCAGGAAATAACTTTTTGTGCTAAATA
TACAAATTTACTTAAATTTTTAATGAAATCTGAGCACTTTGCTGCTAAAG
AATGAAAGAAGATAATGCCAGAGGGGAGATCATTAAGTCATCCAAAAAGA
ATTTAAGTAATTTGTTAATTAAAAATCATATTTGCTGGTTCTTTGAGTAA
CTTTTTTACTATTCAAGTATTCTTGCATGTAAAGTATCATGAATGTAAAG
TATCATGAGAAAATAAAACTGTAAAATCATGATGTGTAAAAAAAAGAAAC
ATATATTGCCTAANAATTAAAATACATGATAGGGTTAAATAATAATCCCA
TAAGAGAGATATGACCAATATCCCTACAGAATTTTCTAATATTTATGAAA
ACCCTCCTCCCCCAGGAGAAAACACCCCATCCCCTCCATAACTCCGGGAA
AAAAGAA

ATGACAAATGGNNTAAGCCCCTGNNCGGCCCGCCTGGNTCTTCAACATTT
AAGGTGAACACTAATAAAAAGGATCCCGCGAAATTCACACTGCAAAATTT
AANCCACAGGTTGCTAAACATTTCTGCANTTGGNCGGAAACAACTTCAAC
TTCCTTTCCAATCTGTATCCTGGCAGGTTTCCAACCCCATTTGTGAAAAA
TCCAAAAAAGTAGGNNTGTTTTANNTATTTTTTGAANAAAAAAATCCNNA
AAAAAAAACCCTGGNNTGGNNNNCCCAAAAATCTTTTTTTTAAATTTTCC
AAAAAAACAAAAAACCCGGGGGGGGGCACAAAAAAAAATTTCTTACAAAA
TTTCTCNNCAAAAAATTTTCCCCCTCTTTTTTTNNNTGNNTTCCCCCCCC
TTTCTTTCTCTCCTTTTTTTTCTAGNNAAAAAAAAAAAAACAACTTCTTT
TTTCTTACNCCCTAANNAAAAAAAAAAAAACACACCNCCCCCNCCNCCCC
CCCNCCCCTCCCCCNNNNNATATCTTTTTNGTTTTGATAATGAAAGAAAA
AGAAAGCCTGGCCTGGAAGAAGAAGGGGGCTGAGGGAGGGGACTGAGTGA
AGAGCTGGAGAAGGCAGACCCGACTAGAAGACGAGACTGAGGGGGGACTG
GACTGGAGACTGACTGAAGGGGGGGAAGGCTGAAAGGAGGGAGGGAGACT
GAGACTGAGGGAAACTGAAAAGCACTGNGGGGNTTATGTTTTCGCTCGAG
TGTTTTTATTTCGCTTACGCTTGGAGGGACTGATGACTGGAGGAACAAGC
TCTGAGGAACTGAGAGGAGAGAGAAAGACTGCTGGAGACTGGGAGCTAGC
TAGGAGGACTTCAATTCGCTNGGGGGATGGGGGCTGGGGGAGGGGGG

Query= MSMg01no357_m24.b1 MSMg01no357_m24.b1 CHROMAT_FILE:
MSMg01no357_m24.b1 PHD_FILE: MSMg01no357_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:54 2005
         (536 letters)



>mm_chr12_7952372_7953308
          Length = 937

 Score =  948 bits (490), Expect = 0.0
 Identities = 522/533 (97%), Gaps = 1/533 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctccctcanc-ccacttgtttgtttagtttatattactaggtttctgcttatc 63
           ||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 205 gaattctctccctcaacaccacttgtttgtttagtttatattactaggattctgcttatc 264

                                                                       
Query: 64  tggacaatggaaaactgtccagtggtgtctgtgtttgcttacacaaataaatattggatt 123
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagacaatggaaaactgtccagtggtgtctgtgtttgcttacacaaataaatattggatt 324

                                                                       
Query: 124 aattagaacatgttcttagagaaggacaccaaattcttccttaaacatcatcaacgtaag 183
           | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acttagaacacgttcttagagaaggacaccaaattcttccttaaacatcatcaacgtaag 384

                                                                       
Query: 184 taggatgacccattgttgtttcatggaggtattacttcactataattatgtcataaataa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taggatgacccattgttgtttcatggaggtattacttcactataattatgtcataaataa 444

                                                                       
Query: 244 ggatagtgacagaagcattgatatgaatagtgtctgtctcaggaaataactttttgtgct 303
           ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 445 ggatagtgacagaagcattgatatgaatagtgtctgtctcaggaaatgattttttgtgct 504

                                                                       
Query: 304 aaatatacaaatttacttaaatttttaatgaaatctgagcactttgctgctaaagaatga 363
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 505 aaatatacaaatttacttaaatttttaatgaaatctgagcactttgaggctaaagaatga 564

                                                                       
Query: 364 aagaagataatgccagaggggagatcattaagtcatccaaaaagaatttaagtaatttgt 423
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 565 aagaagataatgccagaggggagatcattaagtcattcaaaaagaatttaagtaatttgt 624

                                                                       
Query: 424 taattaaaaatcatatttgctggttctttgagtaacttttttactattcaagtattcttg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 taattaaaaatcatatttgctggttctttgagtaacttttttactattcaagtattcttg 684

                                                                
Query: 484 catgtaaagtatcatgaatgtaaagtatcatgagaaaataaaactgtaaaatc 536
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 catgtaaagtatcatgaatgtaaagtatcatgagaaaataaaactgtaaaatc 737


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 937
Length adjustment: 10
Effective length of query: 526
Effective length of database: 927
Effective search space:   487602
Effective search space used:   487602
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)