Query= MSMg01no358_l19.b1 MSMg01no358_l19.b1 CHROMAT_FILE:
MSMg01no358_l19.b1 PHD_FILE: MSMg01no358_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:05 2005
(501 letters)
>mm_chr12_7020398_7021298
Length = 901
Score = 808 bits (418), Expect = 0.0
Identities = 451/462 (97%)
Strand = Plus / Minus
Query: 4 ggaattccttctcatgtacgctttgaggaatatgagccaattagtattctcaaattgttt 63
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggaattccttctcatgaattctttgaggaatatgagccaattagtattctcaaattgttt 403
Query: 64 ttcaatcgcgaatagtgactcaaagggtatattcctttctatgtttggcttctcccagag 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 402 ttcaatcgcgaatagtgactcaaagggtatattcctttctatgtttggcttctctcagag 343
Query: 124 tgggaggagccaaaaagatatgtggtgttccaaaagtagtcaacttacatattttctata 183
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 342 tgggaggagccaaaaagatgtgtggtgttccaaaagtagtcaacttacatatattctata 283
Query: 184 tttattgagtgttattacccaaagagttttctgctttaagttaagtagaattaatgcaaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tttattgagtgttattacccaaagagttttctgctttaagttaagtagaattaatgcaaa 223
Query: 244 gtttaaaaagataacagacaggctggtgagatggctcagtgggtaagagcacccgactgc 303
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 222 gtttaaaaagataacagacgggctggtgagatggctcagtgggtaagagcacctgactgc 163
Query: 304 tcttccagaggtccggagttcaaatcccagcaaccacgtggtggctcacaaccatctgta 363
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 162 tcttccagaggtccagagttcaaatcctagcaaccacgtggtggctcacaaccatctgta 103
Query: 364 acaagatctgacgccctcttctggagtgtctgaagacagctacagtgtacttacatataa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 acaagatctgacgccctcttctggagtgtctgaagacagctacagtgtacttacatataa 43
Query: 424 taaataaataaataaaagataaaggactttagcactgcaaat 465
|||||||||||| |||||||||||||||||||||||||||||
Sbjct: 42 taaataaataaaaaaaagataaaggactttagcactgcaaat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no358_l19.g1 MSMg01no358_l19.g1 CHROMAT_FILE:
MSMg01no358_l19.g1 PHD_FILE: MSMg01no358_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:05 2005
(516 letters)
>mm_chr12_6909308_6910223
Length = 916
Score = 982 bits (508), Expect = 0.0
Identities = 514/516 (99%)
Strand = Plus / Plus
Query: 1 caaagaattaagctctaagacagggaaggtatgtagtaaggtgaaagtaaacagaaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaagaattaagctctaagacagggaaggtatgtagtaaggtgaaagtaaacagaaaaaa 260
Query: 61 gcaaaagtttccttcttccatgtccttgtatatgcttccagcaaaaggcatggcccaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaaaagtttccttcttccatgtccttgtatatgcttccagcaaaaggcatggcccaaat 320
Query: 121 tagaggggtgtttcttatttcaaaaggtctagattaaaggtatgtcttcctacttcagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagaggggtgtttcttatttcaaaaggtctagattaaaggtatgtcttcctacttcagag 380
Query: 181 atatagactaaaagttgtcctccttcaaattaagcaagtaaacaaacaaacaatcaaaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatagactaaaagttgtcctccttcaaattaagcaagtaaacaaacaaacaatcaaaca 440
Query: 241 atcaaaaaattccctctgggtaccctatccacttttggagctgttgttaattccacatgt 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcaaaaaattccttctgggtaccctatccacttttggagctgttgttaattccacatgt 500
Query: 301 agtcaagttatcaaccaagaatagccatcacagcatgttacaaaaattagtgaaaaagaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtcaagttatcaaccaagaatagccatcacagcatgttacaaaaattagtgaaaaagaa 560
Query: 361 gctataaatgtgaaagagagaaaagaggtgcatataagacagtataaggggaggaaaaag 420
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 561 gctataaatgtgaaagagagaaaagaggttcatataagacagtataaggggaggaaaaag 620
Query: 421 aagagtgaaacaatagaattataccataatttcaaaaagttaagtaaataacaaaaatgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagagtgaaacaatagaattataccataatttcaaaaagttaagtaaataacaaaaatgt 680
Query: 481 ttagagacctataaaatgtaaggaaattttatgttg 516
||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttagagacctataaaatgtaaggaaattttatgttg 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space: 458436
Effective search space used: 458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
