BAC Information

Click to search

BAC

Clone NameMSMg01-359H14
Chromosome12 (Build37)
Map Location 74,516,784 - 74,517,196
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc9, 1810048J11Rik, LOC209183, LOC100041323, Dhrs7, LOC100041157, 5033425G24Rik, Ppm1a, Six6os1, Six6, LOC100041234, Six1, Six4, Mnat1, Trmt5, Slc38a6, EG666356
Downstream geneTmem30b, 2210039B01Rik, Prkch, EG666385, LOC100041489, Hif1a, EG277089, Snapc1, Syt16, 1700086L19Rik, Dbpht2, LOC671971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359H14.T7 (MSMg01no359_h14.b1)MSMg01-359H14.TJ (MSMg01no359_h14.g1)
ACCAG468880AG468881
length783754
length of high quality
(start - end)		414 (44 - 457)381 (55 - 435)
definitionCHROMAT_FILE: MSMg01no359_h14.b1 PHD_FILE: MSMg01no359_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:58 2005CHROMAT_FILE: MSMg01no359_h14.g1 PHD_FILE: MSMg01no359_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGGCCCTGACATC
AGCCTGCTGTGGCTCATTTGTAAGAGCCCTGGGACATTTCTATTTCATGT
TCAAAGCCTTGCCTGGCTGGAAAATTGAGTGAGTGCTGTCTCTCCAAAGC
TCTCTACAGAGATGTTGTGAAAAGAAGTGTGTTCTCGTCCACGTGGTACA
TCCGGAGTAGTGCAGACCTGTGCTGTTAGTGGAACACAGGGTGTGTGTTT
GAATGCACGTAGCCGCATGCTTTTCAACCTGGAATGTTTGTCTTTGCAGC
CTTTGTAAAAAACATCCCCAGATTCAACATGGTTCCAAAGACCCTCGGTC
CTTTAGTTCCTCACCAGCTATAGGCCGTGGTTATTTAATATCTATAAACG
TCTATAAACCTATCCGAAAGATTCCTATCTCCTCTCTAGTCTTATGCCCT
CACTCCAAGAGCTTTTCATCAGATTGTGGCACTGACAGCAACCTGAAAGA
TACTTTGGCGGCTTTCTGTTTACCTCGTTTACNATGATTTGGAACCTTTT
CAATCCTTTTTCTTTTCATCCTGGAACCCCCCCCCCCGGAAGTTTTCTCG
TATTCCCGGGTTAGCCCAAATTTGTTTTTAAACCAAAAATTCCTAACTTC
TCTCAAGTTTTTTTCTTAAAGTGGGTTAAAGCGTTTGTTGGAGACCCTTT
TTCTTTGAGCTCTTTAATGAGAAATCTATAAAAAAGGTTTTTTTATTTCC
CCTCCCTCTCTCTTTAATATATTATTGTTCCTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXAGTTCCTAGTACACAAGGCAGCTACTAACCATCTGGAACTCTGGTT
CCAGGGGCTTCCTGGCCTCCATAGGCAGTGAATGCACGTGGTCCATGTCA
AATCTTACAAAGTTTTTTTTTTTAATTTTTTTTTATTAGGTATTTTCCTC
GTTTATATTTTCAATGCTATCCCAAAGGTCCCCCATATCCACCCCACCCA
ATCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTGCCCTGTACT
GGGGCATCTAAAGTTGGCAAGTCCAATGGGCCTCTCTTTGCAGTGATGGC
CGACTAGGCCATCTTTTGATACATATGCAGCTAGAGACAAGAGCTCCGGG
GTACTGGTTAGCTCATATTGTTGTTCCACCTATAGGGTTGCAGTTCCCTT
TATCTCCTTGGCCAATATTCCTAGCTCCTGCCTTGGAGACCTTGTGATCC
ATTCACTCTTTAATCGTCCTTATTTTCTTTTTTTTTACCTTCCCTCCAGG
TTTGCATTTTTATCACGCCTCATTTTTTTTCTTTCCCTTTTTCTTACCTT
ACTTTCTTTTTTTTATTCCCCTTTCTCCCTCTTTGTTTTTCTTCCCTTTC
ATCCTTCCCCTTTCCTATATTCTTCTCTTACCCCTCTTCCCTCTTTTTTT
TTTTTTTTTCACCCCTTTTTTTCCTTTTCCTCCCCCTTCTTTTTATCATT
CTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_h14.b1 MSMg01no359_h14.b1 CHROMAT_FILE:
MSMg01no359_h14.b1 PHD_FILE: MSMg01no359_h14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:58 2005
         (414 letters)



>mm_chr12_74516584_74517396
          Length = 813

 Score =  770 bits (398), Expect = 0.0
 Identities = 410/414 (99%), Gaps = 1/414 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgacatcagcctgctgtggctcatttgtaagagccctgggacatttctatttcatgttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tgacatcagcctgctgtggctcatttgtaagagccctgggacatttctatttcatgttca 554

                                                                       
Query: 61  aagccttgcctggctggaaaattgagtgagtgctgtctctccaaagctctctacagagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 553 aagccttgcctggctggaaaattgagtgagtgctgtctctccaaagctctctacaaagat 494

                                                                       
Query: 121 gttgtgaaaagaagtgtgttctcgtccacgtggtacatccggagtagtgcagacctgtgc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 493 gttgtgaaaagaagtgtgttctcgtccacgtggtacatccggagtagtgcaggcctgtgc 434

                                                                       
Query: 181 tgttagtggaacacagggtgtgtgtttgaatgcacgtagccgcatgcttttcaacctgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgttagtggaacacagggtgtgtgtttgaatgcacgtagccgcatgcttttcaacctgga 374

                                                                       
Query: 241 atgtttgtctttgcagcctttgtaaaaaacatccccagattcaacatggttccaaagacc 300
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 373 atgtttgtctttgcagcctttgt-aaaaacatccccagattcaacatggttccaaagacc 315

                                                                       
Query: 301 ctcggtcctttagttcctcaccagctataggccgtggttatttaatatctataaacgtct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ctcggtcctttagttcctcaccagctataggccgtggttatttaatatctataaacgtct 255

                                                                 
Query: 361 ataaacctatccgaaagattcctatctcctctctagtcttatgccctcactcca 414
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ataaacctatccaaaagattcctatctcctctctagtcttatgccctcactcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 813
Length adjustment: 9
Effective length of query: 405
Effective length of database: 804
Effective search space:   325620
Effective search space used:   325620
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |