BAC Information

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BAC

Clone NameMSMg01-359K15
Chromosome12 (Build37)
Map Location 114,054,001 - 114,235,426
singlet/doubletdoublet
Overlap geneBC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6
Upstream geneZfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194
Downstream genePacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359K15.T7 (MSMg01no359_k15.b1)MSMg01-359K15.TJ (MSMg01no359_k15.g1)
ACCAG469025AG469026
length765800
length of high quality
(start - end)		359 (28 - 386)340 (55 - 394)
definitionCHROMAT_FILE: MSMg01no359_k15.b1 PHD_FILE: MSMg01no359_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:12 2005CHROMAT_FILE: MSMg01no359_k15.g1 PHD_FILE: MSMg01no359_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,235,072 - 114,235,426)(114,054,001 - 114,054,340)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTAGCCTTCGTAG
GAAGTACAGGAGGGAGGTGTCAGTTGCTTTGAACAGCCATCTTTCAGGTG
GCTACCTGCCTGCCCTCCCCTGAAATCAGCATGCCCACATGGACTAGACC
CTCCTCGGTCTTCTTGCCTTCCTCCAGCTTCGTTGTAAGCCCCTTTTCTC
GTTAGTGGCTGTCTTTTCCTAGGTGTCTCTGCTTACAGCAACCTAAGCTG
GACACTGAACAGTAGAATGTGTGCCTCGTACACTAAAGTGAGTGATGGGG
TCCTGCAGCAGAGCCCCTGACTCTGGAAAATGTTGTACCTGTAATCAGGG
TTTAGAGGTCTTTTCAAGTAGCTTGTGCCAAGGGAAGTAGTAGGCATCAG
GACCTCAGGCTTAGATGCCAAATGCAAGGCAGCGGGTAGCTGGAGAAGTT
GGGATTTGAGCGAAACCCTGAGAGTCTGGAGCAAAATATTGTTCCCCATG
ATGCACACCCTGCAGTATTGATCACGACTCTTCGAACGTCCCCCTTTGTA
TGCGTGTTGATGATCCCTGTGCCCCTTATTTTCCGTTTAAACTTCCCCTT
TTATTTCCCCCTTTTTTTTATTCTTTTCCCCCCTTCTTATTCCATGCCTT
CTTCCGTTTATTCTAATTTTTTTTTTCACCTTCCCCCTTTTTATCAATTA
TTTCCCATAACTTTCTTCTTTCCCTTTCTATTCTCTAATATATATTTACT
ATCTAATCATTAATG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTGTGGCACTGTTTCCCAGTTCCATGTTAGTTTCCTAGGACCTCTGT
CAAACTACCGTATAACACGTGCTCAGGTCTGATAGGGAGCACCGATGATA
AGGGGCAGAGCCAGTCTCCATGGAGTTTCTGGGGACACTGTAGGCTGGTA
CCAGGTACCTGTTGACCCCTGCGTGGCTCACAGTTGGATCCATGAGTTCA
GAAGTCAGAAGATAGCTGCTGATCACTTGCAGGAACATGACCTGGCCCTC
CCCCGTGCTGTTTCCTGGGGTGTTATACCTATCTTTCTCTGTGTTGGATC
CTCACCCAGCAGCCTCGGGGACAAGCTTCCCTCTGAGTGGGAGGGTGGGA
GGTTTTACTGTCCCGCCCCTTGCTTTTTCCCTTTACTATCCCGCTTTCTT
TCCCATTTATTCTTCTTTTTTCTCTTTTCTCGTTTCCTCTCTTCTTTTTA
CTTTTTTCCATTTACTCCCCCTTCTTTTTCCCCTTCTTTTTCCTTCTTTT
TTTTCCCCCTTCCTTTTTCCCCCCCACCCTTATTTTTTCCTCGCCCCTTT
TTTTTTTTTCTTCCCCTTATTTTTTTTTTTTCTTCCTCCCCCCCCTCTCT
CCTTTTTTCGCGCTTCCCTTTCTTTTTCTCTATACTCTCTCCTCTCCACG
TTCCTTACCATATCATCCCTTTCCCTTTTTTCTTTCCTTTCCTTACCCCC
TTCCCCCGCCTTTTCTCCCAACACCTTTTCCTTCTCTTTCCCGTCTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_k15.b1 MSMg01no359_k15.b1 CHROMAT_FILE:
MSMg01no359_k15.b1 PHD_FILE: MSMg01no359_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:12 2005
         (359 letters)



>mm_chr12_114234868_114235626
          Length = 759

 Score =  679 bits (351), Expect = 0.0
 Identities = 354/355 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttagccttcgtaggaagtacaggagggaggtgtcagttgctttgaacagccatc 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gaattcttagccttggtaggaagtacaggagggaggtgtcagttgctttgaacagccatc 500

                                                                       
Query: 65  tttcaggtggctacctgcctgccctcccctgaaatcagcatgcccacatggactagaccc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tttcaggtggctacctgcctgccctcccctgaaatcagcatgcccacatggactagaccc 440

                                                                       
Query: 125 tcctcggtcttcttgccttcctccagcttcgttgtaagccccttttctcgttagtggctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tcctcggtcttcttgccttcctccagcttcgttgtaagccccttttctcgttagtggctg 380

                                                                       
Query: 185 tcttttcctaggtgtctctgcttacagcaacctaagctggacactgaacagtagaatgtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tcttttcctaggtgtctctgcttacagcaacctaagctggacactgaacagtagaatgtg 320

                                                                       
Query: 245 tgcctcgtacactaaagtgagtgatggggtcctgcagcagagcccctgactctggaaaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tgcctcgtacactaaagtgagtgatggggtcctgcagcagagcccctgactctggaaaat 260

                                                                  
Query: 305 gttgtacctgtaatcagggtttagaggtcttttcaagtagcttgtgccaagggaa 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gttgtacctgtaatcagggtttagaggtcttttcaagtagcttgtgccaagggaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space:   262500
Effective search space used:   262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no359_k15.g1 MSMg01no359_k15.g1 CHROMAT_FILE:
MSMg01no359_k15.g1 PHD_FILE: MSMg01no359_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:12 2005
         (340 letters)



>mm_chr12_114053801_114054540
          Length = 740

 Score =  658 bits (340), Expect = 0.0
 Identities = 340/340 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtggcactgtttcccagttccatgttagtttcctaggacctctgtcaaactaccgtata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtggcactgtttcccagttccatgttagtttcctaggacctctgtcaaactaccgtata 260

                                                                       
Query: 61  acacgtgctcaggtctgatagggagcaccgatgataaggggcagagccagtctccatgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacgtgctcaggtctgatagggagcaccgatgataaggggcagagccagtctccatgga 320

                                                                       
Query: 121 gtttctggggacactgtaggctggtaccaggtacctgttgacccctgcgtggctcacagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtttctggggacactgtaggctggtaccaggtacctgttgacccctgcgtggctcacagt 380

                                                                       
Query: 181 tggatccatgagttcagaagtcagaagatagctgctgatcacttgcaggaacatgacctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggatccatgagttcagaagtcagaagatagctgctgatcacttgcaggaacatgacctg 440

                                                                       
Query: 241 gccctcccccgtgctgtttcctggggtgttatacctatctttctctgtgttggatcctca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccctcccccgtgctgtttcctggggtgttatacctatctttctctgtgttggatcctca 500

                                                   
Query: 301 cccagcagcctcggggacaagcttccctctgagtgggagg 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccagcagcctcggggacaagcttccctctgagtgggagg 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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