BAC Information

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BAC

Clone NameMSMg01-360C04
Chromosome12 (Build37)
Map Location 98,850,426 - 98,850,760
singlet/doubletsinglet
Overlap genenone
Upstream geneEG628277, LOC382626
Downstream geneLOC100039743, LOC667732, LOC628351, LOC100039770, LOC667746, Galc, Gpr65, Kcnk10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360C04.T7 (MSMg01no360_c04.b1)MSMg01-360C04.TJ (MSMg01no360_c04.g1)
ACCAG469384AG469385
length750768
length of high quality
(start - end)
481 (44 - 524)333 (74 - 406)
definitionCHROMAT_FILE: MSMg01no360_c04.b1 PHD_FILE: MSMg01no360_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:48 2005CHROMAT_FILE: MSMg01no360_c04.g1 PHD_FILE: MSMg01no360_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCG
GAATTCAATGCTTATCCCCCCTCTTTCTCTTACTTTCTCTCTTTCGTTTT
TGTCAGGGGCCTTGGATGGGAGAGTGCATGCTCTAGGTTGGTAGCTCAAT
GCCTGAGAGATCTTGGGGGTCCAGGTTAGTTGAGATTGCTGGCCTTCCTA
TGGAGTTGCTCTCTCCTTCATCTTCATCTATCCTTCCCCTAATGCACCCA
TAGGGGTCCACGACTTCAGTTCTGTGGTTGCGTGTAAGTATCTGCTTCTG
TCACAGTCAGCTGTTGGTAGGTTCTCTCAAAAGCTCCCATCTGTAAGCAC
ATCACAGCATCAGTAGTAGTATCAGGTCTTGGTGCCTTCCCATGAGATGT
ATTCCAAGTTGGGCTGGACAGTGAACTTCCTATCCTTCAGTCTCTTCTCC
ATTTTTATTGCTGCACTTCTTTTGAACAGTTTGGGGTCAAAGATTTTGAC
TGTAGGTTAATAATCCTGTCCCACCACTTGAGGCCCTGCCTTTCTATTGG
AGGTGGACTCTTTCAGTTCCCTCTCCCCAATGTATGGCATTTTGTTAAGG
TCCCCCTTGTATTCTCTGTTACTTTTCATTCCGACGTCCTCCCCCTCTGT
TCTCCCTCTGATGCTGCTATCTCTCTTTCCTTCTCTTGGGCCCTTGGGGT
TATTTCTCCTGCTCCCCCAACTTGGATCCCTGTTTCCCTTTTGCCATTTT

CAATGATGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGCGCCCTGTTTCATTCTTATCTCCTT
CAACTCCTGACCTTGTTTGACATGCTCTACAGAAATGTCAAAAATTCTTC
AGCCGAGTCCTGCAAACACCTGCAAAGGTCCTGAGCTTGATTACAGACAG
CTGGTGTTGATTGCAAAGAGTGCTGGCTTTTTTTTTTTTCTTTCTTTCTT
TCACAGACTTTCTAACTGGTAGAAATTAGAATTGAAAGAGATCAGATGAG
TCCTGTCTGTTCTTGCCATATATTTTCAGTGAATCTATGTCCAAGTTATT
CTGTTCAAAGGATGGAATTCCAGCATTCTGAGGGGTGGGAGTGGAGTTGT
AAGGGGAAGCCTCTCTTGTATTTAAAGGCAACTGTATGAAGTGCTCCTTT
TGTTACCATAATTTTTCCTTGCTATATTTATACAATCTTTCTTCTTCATA
TTCCATCCAATATATTTTACACCCCCCTGTTTTGCAATGTTTTTTTTGTC
CTCCTTTTTCTCCTCGTAATATTTTTATTATATACGTTTTCTTTTCCATA
CCCACCCTACCCCTATCATTCGTTTTCCTTTTCTTCAACTTTTTTCTATT
TTCTCCCCTTCTATCCCTTTTTTTCCCATTACTTTCCCTCTCTCCCCATA
TTCCCCTTTTCCATCTTCCACGTTCTCCTCCCCCTTTTTTCTTCTTTCCT
TCCCTACACTTATTACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_c04.g1 MSMg01no360_c04.g1 CHROMAT_FILE:
MSMg01no360_c04.g1 PHD_FILE: MSMg01no360_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:48 2005
         (333 letters)



>mm_chr12_98850226_98850960
          Length = 735

 Score =  592 bits (306), Expect = e-173
 Identities = 328/336 (97%), Gaps = 4/336 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcgccctgtttcattcttatctccttcaactcctgaccttgtttgacatgctctacaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tgcgccctgtttcattcttatctccttcaactcctgaccttgtttgacatgctctacaga 476

                                                                       
Query: 61  aatgtcaaaaattcttcagccgagtcctgcaaacacctgcaaaggtcctgagcttgatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 aatgtcaaaaattcttcagccgagtcctgcaaacacctgcaaaggtcctgagcttgatta 416

                                                                       
Query: 121 cagacagctggtgttgattgcaaagagtgctggc--ttttttttttttctttctttcttt 178
           ||||||||||||||||||||| || |||||||||  ||||||||||||||||||||||||
Sbjct: 415 cagacagctggtgttgattgctaa-agtgctggcttttttttttttttctttctttcttt 357

                                                                       
Query: 179 cacagactttctaactggtagaaattagaattgaaagagatcagatgagtcctgtctgtt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 356 cacagactttctaactggtagaaattagaattgaaagagatcagatgagtcgtgtctgtt 297

                                                                       
Query: 239 cttgccatatattttcagtgaatctatgtccaagttattctgttcaaaggatggaattcc 298
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 cttgccatatagtttcagtgaatctatgtccaagttattctgttcaaaggatggaattcc 237

                                               
Query: 299 agcattctgaggggt-gggagtggagttgtaagggg 333
           ||||||||||||||| ||||| ||||||||||||||
Sbjct: 236 agcattctgaggggtggggaggggagttgtaagggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 735
Length adjustment: 9
Effective length of query: 324
Effective length of database: 726
Effective search space:   235224
Effective search space used:   235224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)