BAC Information

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BAC

Clone NameMSMg01-360P13
Chromosome12 (Build37)
Map Location 99,707,649 - 99,708,221
singlet/doubletsinglet
Overlap geneKcnk10
Upstream geneLOC382626, LOC100039743, LOC667732, LOC628351, LOC100039770, LOC667746, Galc, Gpr65
Downstream geneSpata7, Ptpn21, Zc3h14, Eml5, LOC100039845, Ttc8, EG667779, Ches1, LOC100039892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360P13.T7 (MSMg01no360_p13.b1)MSMg01-360P13.TJ (MSMg01no360_p13.g1)
ACCAG470017AG470018
length1,257740
length of high quality
(start - end)
---571 (70 - 640)
definitionCHROMAT_FILE: MSMg01no360_p13.b1 PHD_FILE: MSMg01no360_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:52 2005CHROMAT_FILE: MSMg01no360_p13.g1 PHD_FILE: MSMg01no360_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCCGTGCCGCCGCGCGCGTGCCGCTGCTNTTTATCTCATTTCATTCAC
TCAGATACTCTGAACGCAACTCCCTACAANCCAATTTGCGCTCAGAGGGG
TGCGGGCATACGGCGCTTGGCGGNNNTGGTCGCCATAGTGTAGCTTCGTT
TCATTATGTCTCTTCCGCCTGTGCGGCCCTCTGCTGTTGCCCGGTCGGGT
TTGCGCGTGCGCGGGAGCGCGCTGCGCCGCGCCGCCGCAGGTATGTGTGG
GGCCGCAGGGGTGACGGCCACACAGTGCTGCTCCTCGGCTCCTCCTGACC
CTATGCTTGACCTCCCTCTCTGCTTCTTCTCTTCTCTTATCGCTGGCCTA
TGTCGCTGCCCCTTCTCTGCGGGCTCGGGTGTCTCTCCTCAGTTCCCACT
TTTCCCCCACTACACCTTCACTCTGTTTTATTGAGTTTTAGGTCCTCTCT
TGTCTTTCTGTAGCGGTTTTTTCTTCGCCTTACGTGTCTACAGCGACACC
GCTCCGAGGGACTGTGCCCGGGCGCCTGCCGAAGCCAAGATACTAGGAGA
GAAAAACCGCGCGATAGACATAAGGCGAGACGTGCCGAGGCGCCGAGTTT
NTCGACGAGGCACTATCTATGGCCTTCCTGTTCCTCTATTGTCCTTCGGC
GCGGCCTGTCAGCCGATTATACATCCGATGGCACATGAGCGAGACCTTTT
TATCGACGTCCGTCCTGTTTTGACCGACTTGTGTGACAGCTGTATCACGG
CTCACTTGAGACTGAGACTTCCAATGCATGCTTGCCTCGAATATCTTGCG
CGACAGTGCTCAGCGTTGTGTAGGAGTGCGAGTGATCTTAGGCGGGTGTT
GTTATATAGGAGAACAGGCGAGTGTTACTCAGCTGAGGCAAGGAGGATAG
AGGCATGAGTCGATTGCGACGGCCATAGCTAGTGGTGGCAGGTGTATGTT
CGCGTCTGGTATCGCAGCGTTACATCTATGTGGCGGCGACGTGGTGGTGT
GCTATGTCAGTCGGAGATGTTCAACGAGCAGCGACTGTCTGGCGCGATCT
CGCGCATCACGGACGACGCGTCTCTGTTGTGGTGCGACGACACGAGCGCA
TATACGCAATCTTTAAACGGACAGAGTGTGTCGCGTGTGGTGGTAGANTA
GAGGCAGAACGAAACAGAGCTTATCGGATTACTGAGAAGATGAGCGCGTA
GTACGATCACCTCTTCGTTACGTTGCATGCGCGCCGTGGCAGCAGCTCTT
GTACGTG
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCCATACAGTTTTCTAGCTGAGTCCCTCTGTT
GGACGACGCTTTTGGATAAATTTGTACAAGTTTCCCTTAGGGAGCAACAA
ACAGAAAAAGTTCACCCTATTCCTTTTTAGACTTTAAAACTTAAGCGTTT
TAAGACTTAAGACCTGGAAGGAGGTGAAATCAGTCAAAAATTGAACACAG
AGTAAGTGGTACCAAGCAGAGCAATGGACTAGAAGAGCAAAGCACAGAAT
ATTTCCATCCATGAAGACTCTTGTGGAAGCAGACCAGAACAAACTGGGCA
TTAGGACTTTCGGGTCTCCACTTCTATAAATCCATTTTGTTGGTTACACG
GCAGTGTGCAGCAGGAGCAAGGACTGCCCAGAGCCTAGGTTAAACTCCAC
AACAGAGGAGATGAACAGGAAGATGCTCACTAAACGTGAACTGCTTAGTG
AGATGCAGCAGGTCCTTGGAGTGAATCAGAGGCTGTGATCCAATTCAACA
TGAGAGAATAAATTGAAAATGGATGCAGACAGGGCCAATATCAACTTGCT
ATCAAGTGTCTGCGTTTATCTGCACCCCCCCCCATATCTCGCTAAACCTT
CAGGCTCTTCTGGGCTGTCAGACCCTAAGGACCCTTTACAGAAATAGAAA
AGACTGGATGGTTCTAGGGTTAAGGAACCTGGGCCAGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_p13.g1 MSMg01no360_p13.g1 CHROMAT_FILE:
MSMg01no360_p13.g1 PHD_FILE: MSMg01no360_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:52 2005
         (571 letters)



>mm_chr12_99707449_99708421
          Length = 973

 Score = 1046 bits (541), Expect = 0.0
 Identities = 565/573 (98%), Gaps = 2/573 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccatacagttttctagctgagtccctctgttggacgacgcttttggataaatttgtacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccatacagttttctagctgagtccctctgttggacgacgcttttggataaatttgtacaa 260

                                                                       
Query: 61  gtttcccttagggagcaacaaacagaaaaag-ttcaccctattcctttttagactttaaa 119
           ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 261 gtttcccttagggagcaacaaacagaaaaagattcgccctattcctttttagactttaaa 320

                                                                       
Query: 120 acttaagcgttttaagacttaagacctggaaggaggtgaaatcagtcaaaaattgaacac 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttaagcgttttaagacttaagacctggaaggaggtgaaatcagtcaaaaattgaacac 380

                                                                       
Query: 180 agagtaagtggtaccaagcagagcaatggactagaagagcaaagcacagaatatttccat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 agagtaagtggtaccaagcagagcaatggactagaagagcaaagcacaggatatttccat 440

                                                                       
Query: 240 ccatgaagactcttgtggaagcagaccagaacaaactgggcattaggactttcgggtctc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccatgaagactcttgtggaagcagaccagaacaaactgggcattaggactttcgggtctc 500

                                                                       
Query: 300 cacttctataaatccattttgttggttacacggcagtgtgcagcaggagcaaggactgcc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacttctataaatccattttgttggttacacggcagtgtgcagcaggagcaaggactgcc 560

                                                                       
Query: 360 cagagcctaggttaaactccacaacagaggagatgaacaggaagatgctcactaaacgtg 419
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 561 cagagcctaggttaaactccacaacagaggagatgaacaagaagatgctcactaaatgtg 620

                                                                       
Query: 420 aactgcttagtgagatgcagcaggtccttggagtgaatcagaggctgtgatccaattcaa 479
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 aactgcttagtgagatgcagcaggtccttggagagaatcagaggctgtgatccaattcaa 680

                                                                       
Query: 480 catgagagaataaattgaaaatggatgcagacagggccaatatcaacttgctatcaagtg 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 catgagagaataaattgaaaatggatgcagacagggccaatatcaacttgctatcaagtg 740

                                            
Query: 540 tctgcgtttatctgcacccc-cccccatatctc 571
           || ||||||||||||||||| ||||||||||||
Sbjct: 741 tccgcgtttatctgcacccctcccccatatctc 773


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 973
Length adjustment: 10
Effective length of query: 561
Effective length of database: 963
Effective search space:   540243
Effective search space used:   540243
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)