Query= MSMg01no362_h13.b1 MSMg01no362_h13.b1 CHROMAT_FILE:
MSMg01no362_h13.b1 PHD_FILE: MSMg01no362_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:51 2005
(554 letters)
>mm_chr12_85914628_85915581
Length = 954
Score = 884 bits (457), Expect = 0.0
Identities = 509/533 (95%), Gaps = 12/533 (2%)
Strand = Plus / Minus
Query: 22 gtaggagtgatgcctttaattccagtacagaggtagaagcaggcagatgtctatgagata 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954 gtaggagtgatgcctttaattccagtacagaggtagaagcaggcagatgtctatgagata 895
Query: 82 aaagccagcctggtgtatgtcaggccagccaggactagacagtgagaccctgactcaaaa 141
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 gaagccagcctggtgtatgtcaggccagccaggactagacagtgagaccctgactcaaaa 835
Query: 142 caaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaa 201
|| ||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 834 ca-----------aaacaaagaaa-aaagaaagaaagaaagaaagaaagaaagaaagaaa 787
Query: 202 gaaagaaagaaagaaagaaaggaaggaagaaattatttgggattttttaacatctgtagc 261
| ||| ||| ||| ||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 786 ggaaggaaggaaggaaggaaggaaggaagaaattatttgggatttttgaacatctgtagc 727
Query: 262 cctctgtttctctcctgccacttgctgaaatttttttgagcagatcatcaaaatatgcaa 321
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 726 cctctgtttctctcctgccacttgctgaaaattttttgagcagatcatcaaaatatgcaa 667
Query: 322 gtcccttttaaaaccagggaaactggggaaagcaggtagtgaggaaagcccaagaaggga 381
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 666 gtcccttttaaaaccagggaaactggggaaagcagctagtgaggaaagcccaagaaggga 607
Query: 382 gctggcttttagagttattcaagagccttcctgtacttggaaagagtcccattcaagaaa 441
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gctggcttttagagttactcaagagccttcctgtacttggaaagagtcccattcaagaaa 547
Query: 442 caaacaagagtcaggtgtggtggggactggcctgtgccacactgcacaggagtgggggat 501
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 546 caaacaagagtcaggtgtggtggggactggcctgtgccacactgcacaggagagggggat 487
Query: 502 tatgatcaggccaagttcaaggccagctcgatcaccataggtcaggccagccg 554
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tatgatcaggccaagttcaaggccagctcgatcaccataggtcaggccagccg 434
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no362_h13.g1 MSMg01no362_h13.g1 CHROMAT_FILE:
MSMg01no362_h13.g1 PHD_FILE: MSMg01no362_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:51 2005
(485 letters)
>mm_chr12_85710621_85711505
Length = 885
Score = 915 bits (473), Expect = 0.0
Identities = 482/485 (99%)
Strand = Plus / Plus
Query: 1 atccccccacccatgtgtatattgagggcattattgagatagggtttctctgtgtagccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atccccccacccatgtgtatattgagggcattattgagatagggtttctctgtgtagccc 260
Query: 61 tagctggtctaggactccctacgtagaccagaccggcctaaactcgtagagatgtacctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagctggtctaggactccctacgtagaccagaccggcctaaactcgtagagatgtacctt 320
Query: 121 catctgctaggactaaaggtgtactccactatgccaggctgtgctttctctttttaactt 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 catctgctaggactaaaggtgtgctccactatgccaggctgtgctttctctttttaactt 380
Query: 181 tctgacatcaagctgttcctggcttctgttctttaccagcagttcctgggcagagcatta 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 tctgacatcaagctgttcctggcttctgttctttaccagcagttcctgggcagaacatta 440
Query: 241 gccatctgaatcacctttagatcttcttttcttatcagtaaatgagaggacagggctagg 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccatctgagtcacctttagatcttcttttcttatcagtaaatgagaggacagggctagg 500
Query: 301 cagagaccctgcttttagatcacttacagcttgccctctctttgacccacctttctgatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagagaccctgcttttagatcacttacagcttgccctctctttgacccacctttctgatg 560
Query: 361 tttgcttccttcttttctcctgcagatcgagtgaaggttctctatgagagcaaagctgtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttgcttccttcttttctcctgcagatcgagtgaaggttctctatgagagcaaagctgtt 620
Query: 421 ggctattcctggcctggtgcattttccatggcagactccagcccttgggtccatattacc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggctattcctggcctggtgcattttccatggcagactccagcccttgggtccatattacc 680
Query: 481 ctagg 485
|||||
Sbjct: 681 ctagg 685
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
