BAC Information

Click to search

BAC

Clone NameMSMg01-362H14
Chromosome12 (Build37)
Map Location 99,814,442 - 99,814,767
singlet/doubletsinglet
Overlap geneKcnk10
Upstream geneLOC100039743, LOC667732, LOC628351, LOC100039770, LOC667746, Galc, Gpr65
Downstream geneSpata7, Ptpn21, Zc3h14, Eml5, LOC100039845, Ttc8, EG667779, Ches1, LOC100039892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362H14.T7 (MSMg01no362_h14.b1)MSMg01-362H14.TJ (MSMg01no362_h14.g1)
ACCAG471151AG471152
length747750
length of high quality
(start - end)
495 (49 - 543)326 (80 - 405)
definitionCHROMAT_FILE: MSMg01no362_h14.b1 PHD_FILE: MSMg01no362_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:51 2005CHROMAT_FILE: MSMg01no362_h14.g1 PHD_FILE: MSMg01no362_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCATATTGGTTCCCTGAACTGTAGAGTGAGGGCTATTATGGT
TGGAAAGGCCAAATGGAAGCCTTTAGAGTTGCCTCTGCCAAAGAAAATAG
TGAATCAAAAACAGTATCGTATTCCTGGAGGCATTACAGAAATTACTGCC
ACTATCAAGGACTTGAAAGATGCAGGGGTGGTGGTTCCCACCGCATCTCC
GTTTAACTCTCCTATCTGGCCAGTGCAGAAAACAGATGGATCATGGAGAA
TGACAGTTGATTATCGAAAACTAAATCAGGTAGTAACTCCAATTGCAGCT
GCTGTACCAGATGTAGTTTCGTTACTTGAGCAAATTAACACATCTCCTGG
CACCTGGTATGCGGCTATTGATCTGGCAAATGCCTTCTTCTCAGTACCTG
TCCATAAGGACCACCAGAAGCAATTTGCTTTCAGTTGGCAAGGCCAACAG
TATACCTTCACAATTTTGCCTCAAGGATATATTAACTCTCCTGCCCTGTG
TCATAATTTAGTTTAGAGGGATCTTGATCGTTTGGATCTTCCCCAAATAT
CACATTGGTGCACTATATTGAAGACATATGCTGATTGGACCCAGGGAGCA
AGAAGTACCAACCCTTTGTACTCATTGGTAAAACATATGGGAATATAAGA
TGGGAAATAAACCCACCAAATTTTTGGGACCTCTTATCCCCCCAAAT
NNNCCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTATGCATACCAGTTTCTCTG
GGGCTCACAACTGAGAAATGCACAAGTTAGTTCTATTTGCTTTATGTTAA
TGTCTTGTTCATCCTCGAAGTCCAAGGAGGGGAAAGTGTGGAAACAGCCC
AGAGGAGGCTGCTCTCTCTCCAATGCACTCAGGGAAGCCATCCAAAGGGC
TGAGGAGGCAGAACAGCACCTCTGGGTGGTGCCAGCTTTCCTTGAACTTG
GTCTGCAGAGAACTCAAAGCTTGTGTCTGGGCAGCTTGTGAAGTCAGTGA
CAAAGCACTTCCCACAATAGCTCCGTAGAGAAGTGTGGTGGTAGTGGTGG
TGGTGNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTNNTNT
TTTTTTTTTNNNTTTTTTTTTTTTTTNTTNTTTTTTTTTTNTTTTTTTNT
TTNNTTTTTNNTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTNNNTTTTTTTTTTTTTTTTTTTTTNNNTTTTTTTTNTTTTTTNTTTTT
TTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTNTTTTTTNTNTTTTTTTTTTTTTTTTNNTTTTTTTTTTTT
TTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTNTTNTTTTTN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_h14.g1 MSMg01no362_h14.g1 CHROMAT_FILE:
MSMg01no362_h14.g1 PHD_FILE: MSMg01no362_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:51 2005
         (326 letters)



>mm_chr12_99814242_99814967
          Length = 726

 Score =  607 bits (314), Expect = e-178
 Identities = 323/326 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatgcataccagtttctctggggctcacaactgagaaatgcacaagttagttctatttg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 526 ctatgcataccagtttctctggggctcacaactgagaaatgcacaagttagttcaatttg 467

                                                                       
Query: 61  ctttatgttaatgtcttgttcatcctcgaagtccaaggaggggaaagtgtggaaacagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ctttatgttaatgtcttgttcatcctcgaagtccaaggaggggaaagtgtggaaacagcc 407

                                                                       
Query: 121 cagaggaggctgctctctctccaatgcactcagggaagccatccaaagggctgaggaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 406 cagaggaggctgctctctctccaatgcactcagggaagccatccaaagggccgaggaggc 347

                                                                       
Query: 181 agaacagcacctctgggtggtgccagctttccttgaacttggtctgcagagaactcaaag 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 agaacagcatctctgggtggtgccagctttccttgaacttggtctgcagagaactcaaag 287

                                                                       
Query: 241 cttgtgtctgggcagcttgtgaagtcagtgacaaagcacttcccacaatagctccgtaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 cttgtgtctgggcagcttgtgaagtcagtgacaaagcacttcccacaatagctccgtaga 227

                                     
Query: 301 gaagtgtggtggtagtggtggtggtg 326
           ||||||||||||||||||||||||||
Sbjct: 226 gaagtgtggtggtagtggtggtggtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)