Query= MSMg01no365_h20.b1 MSMg01no365_h20.b1 CHROMAT_FILE:
MSMg01no365_h20.b1 PHD_FILE: MSMg01no365_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:00 2005
(462 letters)
>mm_chr12_28843030_28843891
Length = 862
Score = 870 bits (450), Expect = 0.0
Identities = 456/458 (99%)
Strand = Plus / Plus
Query: 5 gaattcagtagttctccatggacactttatggtcaaacacttgtgtttgtacgtagttgg 64
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtagttcagcatggacactttatggtcaaacacttgtgtttgtacgtagttgg 264
Query: 65 tgacattcgtgagcctcttctgcctcagcttccacttctgcaggatggagacaacttcaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgacattcgtgagcctcttctgcctcagcttccacttctgcaggatggagacaacttcaa 324
Query: 125 ggtagtgagtctgaactggaacatggctaggtttaaagggtccgtatgcagaagaatgtg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggtagtgagtctgaactggaacatggctaggtttaaagggtccgtatgcagaagaatgtg 384
Query: 185 tgctgtcagaggaacaggtctcccacactgacatctctacacaaacagcacagttacagc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgctgtcagaggaacaggtctcccacactgacatctctacacaaacagcacagttacagc 444
Query: 245 acttgtaactagggtttggctacatgtatgtgtgtggacctcatgcacacagtatccaag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acttgtaactagggtttggctacatgtatgtgtgtggacctcatgcacacagtatccaag 504
Query: 305 gaggtcagaagagagaattggatcccctggaactgaagaggatgatgtgagctgccatgt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaggtcagaagagagaattggatcccctggaactgaagaggatgatgtgagctgccatgt 564
Query: 365 tggttctgaaagcaaaactcaggtcttcttgaagctcagcctttacacttaactagtagg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tggttctgaaagcaaaactcaggtcttcttgaagctcagcctttacacttaactagtagg 624
Query: 425 ccatctcttcagtctctcaacttccctttatttttttt 462
||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccatctcttcagtctctcaacttccctttatttttttt 662
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space: 385104
Effective search space used: 385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no365_h20.g1 MSMg01no365_h20.g1 CHROMAT_FILE:
MSMg01no365_h20.g1 PHD_FILE: MSMg01no365_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:00 2005
(448 letters)
>mm_chr12_29046384_29047230
Length = 847
Score = 851 bits (440), Expect = 0.0
Identities = 446/448 (99%), Gaps = 1/448 (0%)
Strand = Plus / Minus
Query: 1 aaaattctatattctcatagctcatacagtgtgtttaccaagtagaactaaaagccaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 aaaattctatattctcatagctcatacagtgtgtttaccaagtagaactaaaagccaggc 570
Query: 61 ccataaacaaacaaacaaacaaacaaacaaacaaacaaacaaaaataagcaaccctctca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ccataaacaaacaaacaaacaaacaaacaaacaaacaaacaaaaataagcaaccctctca 510
Query: 121 attttaagtgattttatataaacaactttatataataaggtatttcacagtgattaatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 attttaagtgattttatataaacaactttatataataaggtatttcacagtgattaatct 450
Query: 181 ttattaaaacacttgaattaatagctgctacttgaatacctcggtttaagaaaaaactgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ttattaaaacacttgaattaatagctgctacttgaatacctcggtttaagaaaaaactgt 390
Query: 241 atattttatagatcaaatacacataaatgtatatttgaatttatttaaagataaacatta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 atattttatagatcaaatacacataaatgtatatttgaatttatttaaagataaacatta 330
Query: 301 gtctcttaaaaaaaaacaaataatgaagggcaggaaaaatgctcagtttgtaaggtgctt 360
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 329 gtctctt-aaaaaaaacaaataatgaagggcaggaaaaatgctcagttcgtaaggtgctt 271
Query: 361 actgcacaagctgagggtctgagtttggatccctagcacccacataaaatgcaggtatag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 actgcacaagctgagggtctgagtttggatccctagcacccacataaaatgcaggtatag 211
Query: 421 tgctgtagaactctaatcccagtgctgt 448
||||||||||||||||||||||||||||
Sbjct: 210 tgctgtagaactctaatcccagtgctgt 183
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 847
Length adjustment: 10
Effective length of query: 438
Effective length of database: 837
Effective search space: 366606
Effective search space used: 366606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
