BAC Information

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BAC

Clone NameMSMg01-366C10
Chromosome12 (Build37)
Map Location 60,179,290 - 60,179,682
singlet/doubletsinglet
Overlap genenone
Upstream geneSstr1, Clec14a, LOC100040183, Sec23a, Sip1, Trappc6b, Pnn
Downstream geneEG544872, Mia2, Mgea6, Fbxo33, LOC665628, LOC238199, LOC665639, LOC665644, EG622488
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366C10.T7 (MSMg01no366_c10.b1)MSMg01-366C10.TJ (MSMg01no366_c10.g1)
ACCAG473933AG473934
length780786
length of high quality
(start - end)
254 (331 - 584)393 (81 - 473)
definitionCHROMAT_FILE: MSMg01no366_c10.b1 PHD_FILE: MSMg01no366_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:54 2005CHROMAT_FILE: MSMg01no366_c10.g1 PHD_FILE: MSMg01no366_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCACCTGTTGCATGCCGAATGGCAGAGAAGCACCTGAAAA
AATGTTCAACATCCTTAATCATCAGGGAAATGGAAATCAAAACAACCCTG
AGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGA
CAGCAGATGCTGGCGTGGATGTGAAGAAAGAGGAACACTCCTCCATTGTT
GGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTC
CTCAGAAAATTGGACATAGTACTATCGTAGGATCCAGCACTACCTCTCCT
GGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCA
CTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCC
AGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACAC
AATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAG
CCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCA
CAAAGGAACTCACACAATATATACTCACTGATAAGTGGATATTAACCCCC
AAACCTAGGATTCCCCAAGATATAAGATACCATTTTGCTCAAACCCATGA
AATCTCCTGAAGAATGGAAAACTGAAGTGGGGGAAACCATGCCCCCCCCC
TATAAGATGGGAACAAAAAATCCCTGGGAG
NNNNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTTAGAGACCAGGCTGGC
CTTGAACCCAGAGATCTGTCTGCCTCTGCCTCCCAAGTACTGGGAGTAAA
GGTGTGTAGCACTGTCCCCTGACATAACTGTTAGTGAAATTCTGAGGCAA
TCAAGTGCTCTACATACTTCAGTAGGACTGGTGTAGAACTAGCAATGCGA
ATCTGCTGGAAAGCATCCTGCAGAGGTGCAGGGAGAGAAGCTAGCTTAAA
TAAGGCTGAGTCTTTTTCTTTCCTGTTTTCTCACCTCTCCCTTCCTGGAA
GTTAGCTGTGGCCATGTGATTTGGTTCTGCAGTGTCGATGGGTAAAGAGG
ATATGTTCTCAGGCTGGACCATGGAAGTTCATACAAGGCTTTTTTCATTT
TCTCTTCCACTTTTGTGATGATTTCAGAGGCCACATGATCTAGGATGCTT
ACTCTCTAAATGGATATATTTGTGATCTCTGGGTTACTACCTAAAAGAAA
GTTACCCAGGTCCTTTTCGTGCGTTCGCCCTTTTTATTCCTCTCCTCTGC
TAGTTTAATCTCCCTTTCCTTTTTTCTTTTTTTTTTTTCCCCTCTGTTTT
ACTTTCTGTTTTCCTTGTTAGTCTATTTTTCTCTTAATTACTCTTTTTTT
TATTCTCCTCCCCTCCTTTAGTATACCTTATTCCTTTATCCCCTGTTTTA
TTTTGTTATTATACAATTTCCTTCTTCTTACCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_c10.g1 MSMg01no366_c10.g1 CHROMAT_FILE:
MSMg01no366_c10.g1 PHD_FILE: MSMg01no366_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:54 2005
         (393 letters)



>mm_chr12_60179090_60179882
          Length = 793

 Score =  721 bits (373), Expect = 0.0
 Identities = 388/397 (97%), Gaps = 8/397 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   actttagagaccaggctggccttgaacccagagatctgtctgcctctgcctcccaagtac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actttagagaccaggctggccttgaacccagagatctgtctgcctctgcctcccaagtac 260

                                                                       
Query: 61  tgggagtaaaggtgtgtagcactgtcccctgacataactgttagtgaaattctgaggcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggagtaaaggtgtgtagcactgtcccctgacataactgttagtgaaattctgaggcaa 320

                                                                       
Query: 121 tcaagtgctctacatacttcagtaggactggtgtagaactagcaatgcgaatctgctgga 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaagtgctctgcatacttcagtaggactggtgtagaactagcaatgcgaatctgctgga 380

                                                                       
Query: 181 aagcatcctgcagaggtgcagggagagaagctagcttaaataaggctgagtctttttctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagcatcctgcagaggtgcagggagagaagctagcttaaataaggctgagtctttttctt 440

                                                                       
Query: 241 tcctgtttt----ctcacctctcccttcctggaagttagctgtggccatgtgatttggtt 296
           |||||        |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcctg----ggcactcacctctcccttcctggaagttagctgtggccatgtgatttggtt 496

                                                                       
Query: 297 ctgcagtgtcgatgggtaaagaggatatgttctcaggctggaccatggaagttcatacaa 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ctgcagtgtcgatgggtaaagaggatatgttctcaggctggaccatggaagttcatacaa 556

                                                
Query: 357 ggcttttttcattttctcttccacttttgtgatgatt 393
           |||||||||||||||||||||||||||||||||||||
Sbjct: 557 ggcttttttcattttctcttccacttttgtgatgatt 593


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space:   301056
Effective search space used:   301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)