BAC Information

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BAC

Clone NameMSMg01-366N13
Chromosome12 (Build37)
Map Location 107,874,395 - 107,874,732
singlet/doubletsinglet
Overlap genenone
Upstream gene2410024A21Rik, 4933433P14Rik, Ak7, Papola, Vrk1, LOC100040386, LOC100040404, LOC100040420, 1700121N20Rik, LOC100041191, LOC100040451
Downstream geneLOC673604, LOC100040484, LOC382635, LOC100041251, LOC100040497, LOC668151
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366N13.T7 (MSMg01no366_n13.b1)MSMg01-366N13.TJ (MSMg01no366_n13.g1)
ACCAG474462AG474463
length676774
length of high quality
(start - end)
---337 (78 - 414)
definitionCHROMAT_FILE: MSMg01no366_n13.b1 PHD_FILE: MSMg01no366_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:48 2005CHROMAT_FILE: MSMg01no366_n13.g1 PHD_FILE: MSMg01no366_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCAAGTATCNNNNNNNTNNNNNNTTCCNNNNNTTCCNCCGCTANNCNANC
CACANTTTCANAAATGGGNGNAANNNNNNGTTTTCCGATTAACGGNNGGN
NNAANAANCATCGNCNCGGNGAACACTGGTGGTCCCCCAGACACATCCTC
AAATTGATGTTTTCGACTTAGAGTGTGTGGGTGGAGGATGGGGTGGGGAG
GGGGAGGGGGGGTGGGAGGGGGGGGAGGGGGAGGGTGGGGGCTGGGGGNT
CTTNNNTTTTGAAAGGAGGGNNNTTTNNNNNCGGGTTTTTTTTTNTNNNN
NNNNNNGGTGTCTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAGA
GGTTGCTGGTGGGGGGGGGGGGGGGGGGGGGGGGGGTAGGGGTTTTTTTT
TTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTT
TTTTTTTTTTNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCC
CCTTCTTTTTTTTTTTTTTCNNNNNNNTCNNNCCCCTTTTCCCCCCCTTT
TTTTCCNTTNNNNNNNNTTTTCCTTTTTCCTTTTTTTTCTTTTTTTTTTT
TCCCTTTTTCCCTTCTTTCCCCTTTTTTCCCCCCCTTTTCTTCTTTCCCC
TTTTTTTCTTTCTTCATTTTATTTTG
TTTTCATGATANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGAGAAGCGNAGTGCTAATACTG
CAATGTCCTCAGGCAGAGATTATTGGGGTTAGAAGGCTCTTCCTGCCCCA
AAGTGGTTGAAGATTATGAGAAAGCTCCAGGATCAAGCACTAGTTCTCCA
CTCCCCTGTGAGCCTGTGTGCCTATGCTCTTGCCTGAAAGTCCCAACCCA
TGGTGTACTCACTCGCCTTGGCCTACTAACAAGGTCCTAGTGCATTCCCA
TGGAGCTGCCCTACTGCTCTTTGTTGCTCAGGACTCAATGGGACTTCTCT
TGTCTTGGCCCCTCTCCCAGGGCTTGGGTTTCCTCTCCCCACCCAACTTT
ACTCTCTGAACCCTCCCCGCCCGAAACATGTTCTCTTAGTTAGAGGCAGC
TTGGATATTTATAATGTATACTCTGCCTTTTCGGGAGCCTTATAATCTGC
CCCCCACAATGTCACATATTTCCATCAAAAAGAGAGAGATTTGTACAGTA
GGGATTTGACTTATGACCCCTGTGTGATCTCACAAGTGTGTAAAACTTCC
GTTATCTTGAATTTTTATAAACCGAACCCACAACCTTTCAAAAAAATACT
TCCCCCCTTGTCTCCCTTTTGGATGTGCCGTTTTCAAATAATCTTTTTTC
CTTTTTTTTTCCCCCCCCTTCTATTTAACCCCGCACTGGCTTTATTTTTT
ATTACCCCAACTTTTGTTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_n13.g1 MSMg01no366_n13.g1 CHROMAT_FILE:
MSMg01no366_n13.g1 PHD_FILE: MSMg01no366_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:48 2005
         (337 letters)



>mm_chr12_107874195_107874932
          Length = 738

 Score =  596 bits (308), Expect = e-175
 Identities = 331/341 (97%), Gaps = 7/341 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgagaagcgnagtgctaatactgcaatgtcctcaggcagagattattggggttagaaggc 60
           ||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 538 tgagaagcgtagtgctaatactgcaatgtcctcaggcagagaaaattggggttagaaggc 479

                                                                       
Query: 61  tcttcctgccccaaagtggttgaagattatgagaaagctccaggatcaagcactagttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tcttcctgccccaaagtggttgaagattatgagaaagctccaggatcaagcactagttct 419

                                                                       
Query: 121 ccactcccctgtgagcctgtgtgcctatgctcttgcctgaaagtcccaacccatggtgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ccactcccctgtgagcctgtgtgcctatgctcttgcctgaaagtcccaacccatggtgta 359

                                                                       
Query: 181 ctcactcgccttggcctactaacaaggtcctagtgcattcccatggagctgccctactgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ctcactcgccttggcctactaacaaggtcctagtgcattcccatggagctgccctactgc 299

                                                                       
Query: 241 tctt---tgttgctc-aggactcaatgggacttctcttgtcttggcccctctcccagggc 296
           ||||   ||  || | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tcttcagtg--gc-caaggactcaatgggacttctcttgtcttggcccctctcccagggc 242

                                                    
Query: 297 ttgggtttcctctccccacccaactttactctctgaaccct 337
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttgggtttcctctccccacccaactttactctctgaaccct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 738
Length adjustment: 9
Effective length of query: 328
Effective length of database: 729
Effective search space:   239112
Effective search space used:   239112
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)