BAC Information

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BAC

Clone NameMSMg01-367E02
Chromosome12 (Build37)
Map Location 84,878,660 - 84,878,905
singlet/doubletsinglet
Overlap geneWdr21
Upstream geneRgs6, Dpf3
Downstream geneZfyve1, LOC626950, Rbm25, Psen1, Papln, Numb, LOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367E02.T7 (MSMg01no367_e02.b1)MSMg01-367E02.TJ (MSMg01no367_e02.g1)
ACCAG474772AG474773
length750831
length of high quality
(start - end)
532 (50 - 581)358 (143 - 500)
definitionCHROMAT_FILE: MSMg01no367_e02.b1 PHD_FILE: MSMg01no367_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:21 2005CHROMAT_FILE: MSMg01no367_e02.g1 PHD_FILE: MSMg01no367_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGTTCAATGGGTATCTTCTTTTAGATTTTTTAAAAGATTAC
TTTTTTGATTTTTCTAAATCTTACTTTCCCTCCCTGTGTTAGAGTTTTCC
CTTTATTATCCGAGACAAACCTGGTGGAGACAAGAAACGGATCCCTGGGA
CCAGGGATGCTGGCAGTCTTGGGAAGAGGAGCTGCTGGATGGGGTCTTCA
GGTCTGTGGAGTTCTGTACTCAACACCCAGGGAGATGGCCATGGCTCACC
TGTACTGAAGCAGTTATTTGCCTGGACGTTCAAGGACCAGGCACAGGACC
AGGCCCCAGGGATCCGGAAACTACAGAGCATGCCAGGCTGGTCTGTACCT
GCTATATTATTTGGTTTGTCCATCTATGGTAATTGACAGTTTTGCTGGGA
ATAATAGCCTGGGCTGACATGTGTGTTCCTTTATGGTCTGTGTGACATCT
GTCCAGGATCTTCTGGTTTTCAACATCTATGGCAAGAATTCTGGTATAAT
TCTAATAGATCTGCCTTTATATGTTACTTGGTGGTTTTCCTTTAAAGCTT
TTAACACTCTTTCTTTTGTTTGTGCATTTGGTGTTCTGAATATTATGCGT
TGGAAGGAATCTCCTTTCTGGTCAATCCCTCGGCAATTCTGTCGCCTTTC
TCTATGCTTCTGTGCATCTCCTTTCTTCATGCCCGGGAAGCTCTCCCTCN

ATGTGTGTAGTAGGTATNAGGTAGTGTAGGTTTATGTGGAGCGAGCTAGC
TNTGTGCTGTTTTCGTCTATGACXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTGCTTA
GCTCTGTATGGAATTTTTAAAAATGGATTATTTTTTTAGAGGTGAACTTC
TTGAATTCTTTACATATTTTGATGTTAGCCCTCTATCAGATGTAAGGATA
TTGGAGAATTCTTTTATTGATCAGTAAGATGCTAATATGTTTTATTGACT
GTGGCTTTAGCCTTTCAAATCTGCTCAGTGTCATGAGGTCCCATTTATCC
ATTTTTGATCTTATGGCATAAGCCATTGCCAGTCTACTTAGAAATCTTAA
ATTGTCCCTTGGGCCAATGAGTTTGATGCTCTTTCCACTAACTCTTTTTT
TAGATTAATTTTAATGGGTTTTATGTTGAAGTCATAGATTCTATTCAATT
TGATCTTTGTACAAGCTGATACATAATAATATTTTCACCTTCTTTTAAAT
ACCGACTCAACAGTAGTCCACTCCCATTTATGAAGATGCTGACTTTGTAA
CTCTCGTGTTCTTGGTTTGCGATAAATTTTATTGATTTTTCTGTTTATAA
TTCTTCATTTACACCAGTAGTGTTTTCCCCTCTATTTTTCTTGTCTTTTT
GTTTTCCTCTATCCTTCCCACTTTTTACTATTTCCTATTACTCCTTTTCT
TGCTAATCTTTTGATACATTTATACATTTTCATCTTCCCTTTCTTTCTTA
ATTTCTATTTTAATCTTACTTTTCCCACACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_e02.b1 MSMg01no367_e02.b1 CHROMAT_FILE:
MSMg01no367_e02.b1 PHD_FILE: MSMg01no367_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:21 2005
         (532 letters)



>mm_chr12_84878348_84879279
          Length = 932

 Score =  460 bits (238), Expect = e-134
 Identities = 244/246 (99%)
 Strand = Plus / Minus

                                                                       
Query: 110 tccgagacaaacctggtggagacaagaaacggatccctgggaccagggatgctggcagtc 169
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tccgagacaaacctgatggagacaagaaacggatccctgggaccagggatgctggcagtc 499

                                                                       
Query: 170 ttgggaagaggagctgctggatggggtcttcaggtctgtggagttctgtactcaacaccc 229
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tggggaagaggagctgctggatggggtcttcaggtctgtggagttctgtactcaacaccc 439

                                                                       
Query: 230 agggagatggccatggctcacctgtactgaagcagttatttgcctggacgttcaaggacc 289
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 agggagatggccatggctcacctgtactgaagcagttatttgcctggacgttcaaggacc 379

                                                                       
Query: 290 aggcacaggaccaggccccagggatccggaaactacagagcatgccaggctggtctgtac 349
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aggcacaggaccaggccccagggatccggaaactacagagcatgccaggctggtctgtac 319

                 
Query: 350 ctgcta 355
           ||||||
Sbjct: 318 ctgcta 313


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)