Query= MSMg01no367_h09.b1 MSMg01no367_h09.b1 CHROMAT_FILE:
MSMg01no367_h09.b1 PHD_FILE: MSMg01no367_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:38 2005
(492 letters)
>mm_chr12_106890460_106891351
Length = 892
Score = 799 bits (413), Expect = 0.0
Identities = 431/437 (98%)
Strand = Plus / Minus
Query: 56 ctaagctgtaaacttttcttctctgaaaaaataactggggctagagagatgactcagtgg 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 ctaagctgtaaacttttcttctctgaaaaaataactggggctagagagatgactcagtgg 833
Query: 116 ttaagaggacttgctgtaaaacctcgaagacctaagttcagataccaacacccacataac 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 ttaagaggacttgctgtaaaacctcgaagacctaagttcagataccaacacccacataac 773
Query: 176 aagctgagcatggtctcacctgtgcccaagagtgggtagaaggtagtccctggggcttgc 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 aagctgagcatggtctcacctgtgcccaagagtgggtagaaggtagtccctggggcttgc 713
Query: 236 tgcctgccagcttagacaaaaaaagtgcatgctcctgcctcaaaggagtaagatggcgag 295
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 712 tgcctgccagcttagacaaaaaaagtgcatgcttctgcctcaaaggagtaagatggcgag 653
Query: 296 aaagaggttccctaactcctcaagtgcacaccaggaaatctttaccagtactcagtaggt 355
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 aaagaggttccctaattcctcaagtgcacaccaggaaatctttaccagtactcagtaggt 593
Query: 356 agtgactagacatgtttactataattatgtatctcacacatgcaatgctagtaagaattg 415
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 592 agtgactagacatgtttactataattatgcgtctcacacatgcaatactagtaagaattg 533
Query: 416 tatgtgaataaaaactggcccatttgttaacattgtgcctagcacaggccacattaagtc 475
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tatgtgaataaaaactggcccatttgttaacattgtgcctagcacaggccacattaagtt 473
Query: 476 aggaccaatgagtaagc 492
|||||||||||||||||
Sbjct: 472 aggaccaatgagtaagc 456
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space: 425124
Effective search space used: 425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_h09.g1 MSMg01no367_h09.g1 CHROMAT_FILE:
MSMg01no367_h09.g1 PHD_FILE: MSMg01no367_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:38 2005
(461 letters)
>mm_chr12_106720055_106720910
Length = 856
Score = 630 bits (326), Expect = 0.0
Identities = 403/462 (87%), Gaps = 55/462 (11%)
Strand = Plus / Plus
Query: 1 tttgcttagttctatacttcacttttaactgggttctttgtttacttgatgtccagtttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tttgcttagttctatacttcacttttaactgggttctttgtttacttgatgtccagtttt 308
Query: 61 catatatatatatatatatatatatatatatat-atatatatatacacacatacacacat 119
||| | ||||||||||||||||||||||
Sbjct: 309 cat-----------------------------tcatatatatatacacacatacac---- 335
Query: 120 atacatatctatatacacacatatacatatctatacacacatatacatatatacgcacat 179
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ------------atacacacatatacatatctatacacacatatacatatatacgcacat 383
Query: 180 atatacatatatatatatatacatacacatatatatttcataccatatatatgtatacat 239
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atatac----atatatatatacatacacatatatatttcataccatatatatgtatacat 439
Query: 240 atgtgtgtatgtgcgtatgtcacagtgtatatgtatatatatgcaatatacatataatac 299
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 440 atgtgtgtatgtgcgtatgtcacagtgtatatgtatatatatgcagtatacataaaatac 499
Query: 300 atatacatatatatgtgtgtgtaatatatattgcatatatacacatgagatgccacccct 359
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atatacatttatatgtgtgtgtaatatatattgcatatatacacatgagatgccacccct 559
Query: 360 cttcctgatgtgtaatgggtaaaatcctgtagcttgcattgctactctctgtataaaaga 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cttcctgatgtgtaatgggtaaaatcctgtagcttgcattgctactctctgtata----- 614
Query: 420 tcccaggtacataatggttcatcttaagagttctttcttcac 461
|||||| |||||||||||||||||||||||||||||||||||
Sbjct: 615 tcccagctacataatggttcatcttaagagttctttcttcac 656
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 92
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 856
Length adjustment: 10
Effective length of query: 451
Effective length of database: 846
Effective search space: 381546
Effective search space used: 381546
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
